HL_8UJJ_067

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_067 not in the Motif Atlas

Homologous match to HL_8P9A_174

Geometric discrepancy: 0.1808

The information below is about HL_8P9A_174

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8UJJ|1|L5|U|4497
8UJJ|1|L5|U|4498
8UJJ|1|L5|G|4499
8UJJ|1|L5|U|4500
8UJJ|1|L5|U|4501
8UJJ|1|L5|C|4502
8UJJ|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LB

Large ribosomal subunit protein uL3