HL_8UJJ_112

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8UJJ|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_112 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1423

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8UJJ|1|S2|G|1366
8UJJ|1|S2|U|1367
8UJJ|1|S2|U|1368
8UJJ|1|S2|A|1369
8UJJ|1|S2|A|1370
8UJJ|1|S2|U|1371
8UJJ|1|S2|U|1372
8UJJ|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17