3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
UCUGAUCG
Length
8 nucleotides
Bulged bases
8UJK|1|L5|C|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJK_008 not in the Motif Atlas
Geometric match to HL_1P6V_004
Geometric discrepancy: 0.2884
The information below is about HL_1P6V_004
Detailed Annotation
T-loop with 2 bulged bases not stacked
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8UJK|1|L5|U|204
8UJK|1|L5|C|205
8UJK|1|L5|U|206
8UJK|1|L5|G|207
8UJK|1|L5|A|208
8UJK|1|L5|U|209
8UJK|1|L5|C|210
8UJK|1|L5|G|211

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LY
60S ribosomal protein L26
Chain Le
60S ribosomal protein L32

Coloring options:


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