HL_8UJK_019

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_019 not in the Motif Atlas

Homologous match to HL_8CRE_015

Geometric discrepancy: 0.0873

The information below is about HL_8CRE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UJK|1|L5|U|1389
8UJK|1|L5|G|1390
8UJK|1|L5|A|1391
8UJK|1|L5|A|1392
8UJK|1|L5|G|1393
8UJK|1|L5|G|1394

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36