HL_8UJK_024

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8UJK|1|L5|U|1596, 8UJK|1|L5|A|1600, 8UJK|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_024 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.1413

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8UJK|1|L5|A|1593
8UJK|1|L5|C|1594
8UJK|1|L5|G|1595
8UJK|1|L5|U|1596
8UJK|1|L5|G|1597
8UJK|1|L5|C|1598
8UJK|1|L5|A|1599
8UJK|1|L5|A|1600
8UJK|1|L5|A|1601
8UJK|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37