HL_8UJK_025

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8UJK|1|L5|A|1630, 8UJK|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_025 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.1059

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8UJK|1|L5|G|1627
8UJK|1|L5|C|1628
8UJK|1|L5|G|1629
8UJK|1|L5|A|1630
8UJK|1|L5|A|1631
8UJK|1|L5|A|1632
8UJK|1|L5|G|1633
8UJK|1|L5|A|1634
8UJK|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37