HL_8UJK_028

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8UJK|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_028 not in the Motif Atlas

Homologous match to HL_8CRE_023

Geometric discrepancy: 0.5417

The information below is about HL_8CRE_023

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8UJK|1|L5|C|1816
8UJK|1|L5|U|1817
8UJK|1|L5|G|1818
8UJK|1|L5|G|1819
8UJK|1|L5|C|1820
8UJK|1|L5|G|1821
8UJK|1|L5|U|1822
8UJK|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29