3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
8UJK|1|L5|U|1980, 8UJK|1|L5|A|1984
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJK_031 not in the Motif Atlas
Homologous match to HL_8CRE_026
Geometric discrepancy: 0.3378
The information below is about HL_8CRE_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8UJK|1|L5|C|1978
8UJK|1|L5|A|1979
8UJK|1|L5|U|1980
8UJK|1|L5|G|1981
8UJK|1|L5|G|1982
8UJK|1|L5|A|1983
8UJK|1|L5|A|1984
8UJK|1|L5|G|1985
8UJK|1|L5|U|1986
8UJK|1|L5|C|1987
8UJK|1|L5|G|1988

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Ls
60S acidic ribosomal protein P0
Chain Lt
Large ribosomal subunit protein uL11

Coloring options:


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