HL_8UJK_038

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8UJK|1|L5|U|2530, 8UJK|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_038 not in the Motif Atlas

Homologous match to HL_8CRE_034

Geometric discrepancy: 0.1322

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UJK|1|L5|G|2523
8UJK|1|L5|U|2524
8UJK|1|L5|U|2525
8UJK|1|L5|C|2526
8UJK|1|L5|A|2527
8UJK|1|L5|G|2528
8UJK|1|L5|A|2529
8UJK|1|L5|U|2530
8UJK|1|L5|C|2531
8UJK|1|L5|C|2532

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34