HL_8UJK_059

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8UJK|1|L5|A|4214, 8UJK|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_059 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1391

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8UJK|1|L5|U|4210
8UJK|1|L5|C|4211
8UJK|1|L5|A|4212
8UJK|1|L5|A|4213
8UJK|1|L5|A|4214
8UJK|1|L5|C|4215
8UJK|1|L5|G|4216
8UJK|1|L5|G|4217
8UJK|1|L5|U|4218
8UJK|1|L5|A|4219
8UJK|1|L5|A|4220
8UJK|1|L5|C|4221
8UJK|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29