HL_8UJK_080
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- CACUUG
- Length
- 6 nucleotides
- Bulged bases
- 8UJK|1|L8|U|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJK_080 not in the Motif Atlas
- Homologous match to HL_8P9A_188
- Geometric discrepancy: 0.2499
- The information below is about HL_8P9A_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13184.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8UJK|1|L8|C|107
8UJK|1|L8|A|108
8UJK|1|L8|C|109
8UJK|1|L8|U|110
8UJK|1|L8|U|111
8UJK|1|L8|G|112
Current chains
- Chain L8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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