HL_8UJK_083

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CCUAACACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_083 not in the Motif Atlas

Homologous match to HL_5E81_212

Geometric discrepancy: 0.1287

The information below is about HL_5E81_212

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8UJK|1|Pt|C|31
8UJK|1|Pt|C|32
8UJK|1|Pt|U|33
8UJK|1|Pt|A|34
8UJK|1|Pt|A|35
8UJK|1|Pt|C|36
8UJK|1|Pt|A|37
8UJK|1|Pt|C|38
8UJK|1|Pt|G|39

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

Small ribosomal subunit protein uS19

Chain SQ

Small ribosomal subunit protein uS9