HL_8UJK_094

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8UJK|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_094 not in the Motif Atlas

Homologous match to HL_8CRE_201

Geometric discrepancy: 0.1568

The information below is about HL_8CRE_201

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8UJK|1|S2|C|462
8UJK|1|S2|C|463
8UJK|1|S2|A|464
8UJK|1|S2|A|465
8UJK|1|S2|G|466
8UJK|1|S2|G|467

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6