HL_8UJK_098

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_098 not in the Motif Atlas

Homologous match to HL_8CRE_205

Geometric discrepancy: 0.1188

The information below is about HL_8CRE_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8UJK|1|S2|C|618
8UJK|1|S2|A|619
8UJK|1|S2|G|620
8UJK|1|S2|C|621
8UJK|1|S2|C|622
8UJK|1|S2|G|623

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23