HL_8UJK_112

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8UJK|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_112 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1597

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8UJK|1|S2|G|1366
8UJK|1|S2|U|1367
8UJK|1|S2|U|1368
8UJK|1|S2|A|1369
8UJK|1|S2|A|1370
8UJK|1|S2|U|1371
8UJK|1|S2|U|1372
8UJK|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17