HL_8UJK_120

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

8UJK|1|Zt|C|16, 8UJK|1|Zt|U|18, 8UJK|1|Zt|G|19, 8UJK|1|Zt|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJK_120 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.2399

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8UJK|1|Zt|C|13
8UJK|1|Zt|A|14
8UJK|1|Zt|G|15
8UJK|1|Zt|C|16
8UJK|1|Zt|U|18
8UJK|1|Zt|G|19
8UJK|1|Zt|U|20
8UJK|1|Zt|A|21
8UJK|1|Zt|G|22

Current chains

Chain Zt

Z site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA