HL_8UJK_122
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJK_122 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.3154
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8UJK|1|Zt|G|53
8UJK|1|Zt|U|54
8UJK|1|Zt|U|55
8UJK|1|Zt|C|56
8UJK|1|Zt|A|57
8UJK|1|Zt|A|58
8UJK|1|Zt|G|59
8UJK|1|Zt|U|60
8UJK|1|Zt|C|61
Current chains
- Chain Zt
- Z site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lz
- 60S ribosomal protein L10a
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