HL_8UKB_030

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8UKB|1|L5|U|1980, 8UKB|1|L5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_030 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3024

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8UKB|1|L5|C|1978
8UKB|1|L5|A|1979
8UKB|1|L5|U|1980
8UKB|1|L5|G|1981
8UKB|1|L5|G|1982
8UKB|1|L5|A|1983
8UKB|1|L5|A|1984
8UKB|1|L5|G|1985
8UKB|1|L5|U|1986
8UKB|1|L5|C|1987
8UKB|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain Lt

60S ribosomal protein L12 [Homo sapiens]