HL_8UKB_097

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

8UKB|1|S2|U|540, 8UKB|1|S2|U|541, 8UKB|1|S2|U|542, 8UKB|1|S2|C|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UKB_097 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1055

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8UKB|1|S2|C|539
8UKB|1|S2|U|540
8UKB|1|S2|U|541
8UKB|1|S2|U|542
8UKB|1|S2|C|543
8UKB|1|S2|G|544

Current chains

Chain S2

18S rRNA

Nearby chains