HL_8UKB_106
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8UKB|1|S2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UKB_106 not in the Motif Atlas
- Homologous match to HL_8P9A_211
- Geometric discrepancy: 0.125
- The information below is about HL_8P9A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8UKB|1|S2|G|1054
8UKB|1|S2|A|1055
8UKB|1|S2|U|1056
8UKB|1|S2|C|1057
8UKB|1|S2|A|1058
8UKB|1|S2|G|1059
8UKB|1|S2|A|1060
8UKB|1|S2|U|1061
8UKB|1|S2|A|1062
8UKB|1|S2|C|1063
8UKB|1|S2|C|1064
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sa
- 40S ribosomal protein S26
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