HL_8UMF_004

3D structure

PDB id

8UMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PsCas9 in complex with gRNA and DNA in product state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

8UMF|1|B|U|108, 8UMF|1|B|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UMF_004 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1017

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8UMF|1|B|C|107
8UMF|1|B|U|108
8UMF|1|B|C|109
8UMF|1|B|U|110
8UMF|1|B|G|111

Current chains

Chain B

RNA (121-MER)

Nearby chains

Chain A

Cas9