HL_8UO6_005
3D structure
- PDB id
- 8UO6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases (A, C, G, U)
- 16U, 17C, 18G
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_66853.3
- Basepair signature
- cWW-cWS-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
8UO6|1|B|C|13
8UO6|1|B|A|14
8UO6|1|B|G|15
8UO6|1|B|U|16
8UO6|1|B|C|17
8UO6|1|B|G|18
8UO6|1|B|G|19
8UO6|1|B|U|20
8UO6|1|B|A|21
8UO6|1|B|G|22
Current chains
- Chain B
- HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold
Nearby chains
No other chains within 10ÅColoring options: