HL_8UPO_018

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8UPO|1|D|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1318

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UPO|1|D|G|462
8UPO|1|D|U|463
8UPO|1|D|U|464
8UPO|1|D|A|465
8UPO|1|D|A|466
8UPO|1|D|U|467
8UPO|1|D|A|468
8UPO|1|D|C|469
8UPO|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains