8UPO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UPO_001 | No text annotation | ||
| HL_8UPO_002 | tRNA anticodon loop | ||
| HL_8UPO_003 | No text annotation | ||
| HL_8UPO_004 | No text annotation | ||
| HL_8UPO_005 | tRNA anticodon loop | ||
| HL_8UPO_006 | No text annotation | ||
| HL_8UPO_007 | No text annotation | ||
| HL_8UPO_008 | No text annotation | ||
| HL_8UPO_009 | GNRA | ||
| HL_8UPO_010 | GNRA | ||
| HL_8UPO_110 | No text annotation | ||
| HL_8UPO_011 | UNCG | ||
| HL_8UPO_012 | GNRA related | ||
| HL_8UPO_013 | GNRA | ||
| HL_8UPO_014 | No text annotation | ||
| HL_8UPO_015 | UNCG | ||
| HL_8UPO_016 | GNRA | ||
| HL_8UPO_017 | UNCG | ||
| HL_8UPO_018 | GNRA wlth extra near cWW | ||
| HL_8UPO_019 | No text annotation | ||
| HL_8UPO_020 | GNRA-like with tWH | ||
| HL_8UPO_021 | No text annotation | ||
| HL_8UPO_022 | GNRA | ||
| HL_8UPO_023 | No text annotation | ||
| HL_8UPO_024 | No text annotation | ||
| HL_8UPO_025 | GNRA | ||
| HL_8UPO_026 | GNRA | ||
| HL_8UPO_027 | No text annotation | ||
| HL_8UPO_028 | GNRA | ||
| HL_8UPO_029 | No text annotation | ||
| HL_8UPO_030 | GNRA | ||
| HL_8UPO_031 | T-loop related | ||
| HL_8UPO_111 | No text annotation | ||
| HL_8UPO_032 | No text annotation | ||
| HL_8UPO_033 | GNRA | ||
| HL_8UPO_034 | GNRA | ||
| HL_8UPO_035 | T-loop with 3 stacked bulged bases | ||
| HL_8UPO_036 | No text annotation | ||
| HL_8UPO_037 | UNCG | ||
| HL_8UPO_038 | GNRA | ||
| HL_8UPO_039 | No text annotation | ||
| HL_8UPO_040 | No text annotation | ||
| HL_8UPO_041 | No text annotation | ||
| HL_8UPO_042 | UNCG | ||
| HL_8UPO_043 | No text annotation | ||
| HL_8UPO_044 | No text annotation | ||
| HL_8UPO_045 | No text annotation | ||
| HL_8UPO_046 | No text annotation | ||
| HL_8UPO_047 | T-loop with 2 stacked bulged bases | ||
| HL_8UPO_048 | No text annotation | ||
| HL_8UPO_049 | T-loop with unstacked turn | ||
| HL_8UPO_050 | No text annotation | ||
| HL_8UPO_051 | Pseudoknot geometry | ||
| HL_8UPO_052 | GNRA | ||
| HL_8UPO_053 | GNRA | ||
| HL_8UPO_054 | No text annotation | ||
| HL_8UPO_055 | T-loop with 2 stacked bulged bases | ||
| HL_8UPO_056 | No text annotation | ||
| HL_8UPO_057 | GNRA | ||
| HL_8UPO_058 | No text annotation | ||
| HL_8UPO_059 | GNRA wlth tandem sheared | ||
| HL_8UPO_060 | No text annotation | ||
| HL_8UPO_061 | No text annotation | ||
| HL_8UPO_062 | No text annotation | ||
| HL_8UPO_112 | No text annotation | ||
| HL_8UPO_063 | No text annotation | ||
| HL_8UPO_064 | No text annotation | ||
| HL_8UPO_065 | No text annotation | ||
| HL_8UPO_066 | No text annotation | ||
| HL_8UPO_067 | GNRA wlth tandem sheared | ||
| HL_8UPO_068 | No text annotation | ||
| HL_8UPO_069 | GNRA | ||
| HL_8UPO_070 | T-loop with 2 stacked bulged bases | ||
| HL_8UPO_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8UPO_072 | GNRA | ||
| HL_8UPO_073 | No text annotation | ||
| HL_8UPO_074 | Mini UNCG with extended bulge | ||
| HL_8UPO_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8UPO_076 | UNCG | ||
| HL_8UPO_077 | Mini UNCG | ||
| HL_8UPO_078 | No text annotation | ||
| HL_8UPO_079 | GNRA | ||
| HL_8UPO_080 | UNCG | ||
| HL_8UPO_113 | No text annotation | ||
| HL_8UPO_081 | No text annotation | ||
| HL_8UPO_082 | No text annotation | ||
| HL_8UPO_083 | No text annotation | ||
| HL_8UPO_084 | GNRA related | ||
| HL_8UPO_085 | GNRA variation | ||
| HL_8UPO_086 | No text annotation | ||
| HL_8UPO_087 | No text annotation | ||
| HL_8UPO_088 | No text annotation | ||
| HL_8UPO_089 | No text annotation | ||
| HL_8UPO_090 | No text annotation | ||
| HL_8UPO_091 | No text annotation | ||
| HL_8UPO_092 | No text annotation | ||
| HL_8UPO_093 | No text annotation | ||
| HL_8UPO_116 | No text annotation | ||
| HL_8UPO_094 | Pseudoknot geometry | ||
| HL_8UPO_095 | GNRA | ||
| HL_8UPO_096 | GNRA | ||
| HL_8UPO_097 | No text annotation | ||
| HL_8UPO_098 | No text annotation | ||
| HL_8UPO_099 | GNRA variation | ||
| HL_8UPO_100 | No text annotation | ||
| HL_8UPO_101 | GNRA | ||
| HL_8UPO_102 | GNRA | ||
| HL_8UPO_103 | Ribsomal LSU H95 | ||
| HL_8UPO_104 | No text annotation | ||
| HL_8UPO_105 | No text annotation | ||
| HL_8UPO_114 | UNCG variation | ||
| HL_8UPO_106 | No text annotation | ||
| HL_8UPO_107 | GNRA | ||
| HL_8UPO_115 | No text annotation | ||
| HL_8UPO_108 | No text annotation | ||
| HL_8UPO_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UPO_193 | No text annotation | ||
| IL_8UPO_194 | No text annotation | ||
| IL_8UPO_195 | No text annotation | ||
| IL_8UPO_196 | No text annotation | ||
| IL_8UPO_197 | No text annotation | ||
| IL_8UPO_001 | Single bulged G | ||
| IL_8UPO_002 | Single bulged A | ||
| IL_8UPO_003 | No text annotation | ||
| IL_8UPO_004 | Minor groove platform | ||
| IL_8UPO_005 | Multiple bulged bases | ||
| IL_8UPO_006 | Minor groove platform with extra cWW | ||
| IL_8UPO_007 | Minor groove platform | ||
| IL_8UPO_198 | Single bulged G | ||
| IL_8UPO_008 | Single bulged G, near cWW | ||
| IL_8UPO_009 | Isolated non-canonical cWW pair | ||
| IL_8UPO_010 | Minor groove platform related | ||
| IL_8UPO_011 | Isolated cWH basepair | ||
| IL_8UPO_199 | No text annotation | ||
| IL_8UPO_012 | tWH-tWH-tHW-tHW | ||
| IL_8UPO_013 | No text annotation | ||
| IL_8UPO_014 | Kink-turn with non-sequential stacking | ||
| IL_8UPO_015 | No text annotation | ||
| IL_8UPO_016 | C-loop | ||
| IL_8UPO_017 | Single bulged U | ||
| IL_8UPO_018 | C-loop | ||
| IL_8UPO_019 | Single bulged G | ||
| IL_8UPO_020 | No text annotation | ||
| IL_8UPO_021 | No text annotation | ||
| IL_8UPO_022 | tSH-tHW-tWW | ||
| IL_8UPO_023 | No text annotation | ||
| IL_8UPO_024 | SSU/LSU pseudoknot | ||
| IL_8UPO_025 | Kink-turn related | ||
| IL_8UPO_026 | No text annotation | ||
| IL_8UPO_027 | tSH-tHW-tHS | ||
| IL_8UPO_028 | Major groove platform | ||
| IL_8UPO_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8UPO_030 | No text annotation | ||
| IL_8UPO_031 | Major groove platform; stack outside cWW | ||
| IL_8UPO_032 | Single stack bend | ||
| IL_8UPO_033 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_200 | Triple non-canonical cWW pairs | ||
| IL_8UPO_034 | No text annotation | ||
| IL_8UPO_035 | Kink-turn | ||
| IL_8UPO_036 | Left turn | ||
| IL_8UPO_037 | tSH-tHW-tHS | ||
| IL_8UPO_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8UPO_039 | Single bulged A | ||
| IL_8UPO_040 | Single bulged G | ||
| IL_8UPO_041 | Minor groove platform | ||
| IL_8UPO_042 | No text annotation | ||
| IL_8UPO_043 | Minor groove platform | ||
| IL_8UPO_207 | Single stack bend | ||
| IL_8UPO_044 | No text annotation | ||
| IL_8UPO_201 | No text annotation | ||
| IL_8UPO_045 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_046 | Single bulged U | ||
| IL_8UPO_047 | Stack and bulge | ||
| IL_8UPO_048 | Isolated cWS basepair | ||
| IL_8UPO_049 | Minor groove platform | ||
| IL_8UPO_050 | Single bulged A | ||
| IL_8UPO_051 | Isolated non-canonical cWW pair | ||
| IL_8UPO_052 | No text annotation | ||
| IL_8UPO_053 | Minor groove platform | ||
| IL_8UPO_054 | No text annotation | ||
| IL_8UPO_055 | No text annotation | ||
| IL_8UPO_056 | 180 degree turn | ||
| IL_8UPO_057 | Double sheared with non-canonical cWW | ||
| IL_8UPO_058 | No text annotation | ||
| IL_8UPO_059 | No text annotation | ||
| IL_8UPO_060 | No text annotation | ||
| IL_8UPO_061 | Partly complementary | ||
| IL_8UPO_062 | Isolated non-canonical cWW pair | ||
| IL_8UPO_063 | Double sheared | ||
| IL_8UPO_064 | Triple sheared related | ||
| IL_8UPO_065 | Single bulged A | ||
| IL_8UPO_066 | No text annotation | ||
| IL_8UPO_067 | Triple sheared with non-canonical cWW | ||
| IL_8UPO_068 | Single bulged A | ||
| IL_8UPO_069 | Minor groove platform | ||
| IL_8UPO_070 | No text annotation | ||
| IL_8UPO_071 | Single stack bend | ||
| IL_8UPO_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UPO_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8UPO_074 | No text annotation | ||
| IL_8UPO_075 | No text annotation | ||
| IL_8UPO_076 | No text annotation | ||
| IL_8UPO_077 | No text annotation | ||
| IL_8UPO_078 | Double sheared | ||
| IL_8UPO_079 | Isolated non-canonical cWW pair | ||
| IL_8UPO_080 | AAA cross-strand stack | ||
| IL_8UPO_081 | No text annotation | ||
| IL_8UPO_082 | tHW-tHW cross-strand stack | ||
| IL_8UPO_083 | Single bulged A | ||
| IL_8UPO_084 | Single bulged G | ||
| IL_8UPO_085 | Triple sheared | ||
| IL_8UPO_086 | Major groove platform | ||
| IL_8UPO_087 | Multiple bulged bases | ||
| IL_8UPO_088 | Single stack bend | ||
| IL_8UPO_089 | 90 degree turn | ||
| IL_8UPO_202 | No text annotation | ||
| IL_8UPO_090 | Stack outside cWW | ||
| IL_8UPO_091 | Single stack bend | ||
| IL_8UPO_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8UPO_093 | Single bulged G | ||
| IL_8UPO_094 | C-loop with bulged stacked A's | ||
| IL_8UPO_095 | Isolated non-canonical cWW pair | ||
| IL_8UPO_096 | Double sheared with non-canonical cWW | ||
| IL_8UPO_203 | No text annotation | ||
| IL_8UPO_208 | Single bulged A | ||
| IL_8UPO_097 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_098 | Single stack bend | ||
| IL_8UPO_099 | Single bulged C | ||
| IL_8UPO_100 | UAA/GAN | ||
| IL_8UPO_101 | SSU/LSU pseudoknot | ||
| IL_8UPO_102 | Single bulged U | ||
| IL_8UPO_103 | Kink-turn related | ||
| IL_8UPO_104 | No text annotation | ||
| IL_8UPO_105 | Isolated non-canonical cWW pair | ||
| IL_8UPO_106 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_209 | No text annotation | ||
| IL_8UPO_107 | No text annotation | ||
| IL_8UPO_108 | No text annotation | ||
| IL_8UPO_109 | Major groove platform | ||
| IL_8UPO_110 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_111 | Isolated cWS basepair | ||
| IL_8UPO_112 | No text annotation | ||
| IL_8UPO_113 | Kink-turn | ||
| IL_8UPO_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UPO_115 | Major groove platform; stack outside cWW | ||
| IL_8UPO_116 | C-loop | ||
| IL_8UPO_117 | UAA/GAN | ||
| IL_8UPO_118 | tSH-tHW-tHS | ||
| IL_8UPO_119 | No text annotation | ||
| IL_8UPO_120 | Single stack bend | ||
| IL_8UPO_121 | Single stack bend | ||
| IL_8UPO_204 | No text annotation | ||
| IL_8UPO_122 | No text annotation | ||
| IL_8UPO_123 | UAA/GAN | ||
| IL_8UPO_124 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_125 | tSH-tHW | ||
| IL_8UPO_126 | Single bulged U | ||
| IL_8UPO_127 | No text annotation | ||
| IL_8UPO_128 | tSH-tHW-tHS | ||
| IL_8UPO_129 | 180 degree turn | ||
| IL_8UPO_130 | Single bulged A | ||
| IL_8UPO_131 | UAA/GAN variation | ||
| IL_8UPO_132 | No text annotation | ||
| IL_8UPO_133 | Isolated tWW turn | ||
| IL_8UPO_134 | Major groove platform; stack outside cWW | ||
| IL_8UPO_205 | No text annotation | ||
| IL_8UPO_135 | Intercalated tWH | ||
| IL_8UPO_136 | tSH-tSH-tHH-tHS | ||
| IL_8UPO_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8UPO_138 | Triple sheared | ||
| IL_8UPO_139 | Single bulged C | ||
| IL_8UPO_140 | Single bulged A | ||
| IL_8UPO_141 | Kink-turn related | ||
| IL_8UPO_142 | Minor groove platform, major groove intercalation | ||
| IL_8UPO_143 | Major groove intercalation | ||
| IL_8UPO_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8UPO_206 | No text annotation | ||
| IL_8UPO_145 | UAA/GAN related | ||
| IL_8UPO_146 | Intercalated cWW | ||
| IL_8UPO_147 | Bulged stacked bases | ||
| IL_8UPO_148 | No text annotation | ||
| IL_8UPO_149 | Major groove platform | ||
| IL_8UPO_150 | No text annotation | ||
| IL_8UPO_151 | No text annotation | ||
| IL_8UPO_152 | Decoding loop related | ||
| IL_8UPO_153 | Minor groove platform | ||
| IL_8UPO_154 | Isolated tHS basepair with bulges | ||
| IL_8UPO_155 | Isolated non-canonical cWW pair | ||
| IL_8UPO_156 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_157 | Isolated cWH basepair | ||
| IL_8UPO_158 | Isolated non-canonical cWW pair | ||
| IL_8UPO_159 | Tandem non-canonical cWW pairs | ||
| IL_8UPO_160 | Isolated non-canonical cWW pair | ||
| IL_8UPO_161 | Isolated non-canonical cWW pair | ||
| IL_8UPO_162 | No text annotation | ||
| IL_8UPO_163 | Isolated non-canonical cWW pair | ||
| IL_8UPO_164 | Kink-turn | ||
| IL_8UPO_165 | Single bulged U | ||
| IL_8UPO_166 | Double sheared | ||
| IL_8UPO_167 | No text annotation | ||
| IL_8UPO_168 | No text annotation | ||
| IL_8UPO_169 | No text annotation | ||
| IL_8UPO_170 | Major groove minor groove platform with extra cWW | ||
| IL_8UPO_171 | Double sheared with non-canonical cWW | ||
| IL_8UPO_172 | No text annotation | ||
| IL_8UPO_173 | Isolated non-canonical cWW with bulges | ||
| IL_8UPO_174 | No text annotation | ||
| IL_8UPO_175 | Major groove platform with intercalation | ||
| IL_8UPO_176 | No text annotation | ||
| IL_8UPO_177 | Single bulged A | ||
| IL_8UPO_178 | tSH-tHS-tHW | ||
| IL_8UPO_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8UPO_180 | C-loop | ||
| IL_8UPO_181 | UAA/GAN related, with intercalation | ||
| IL_8UPO_182 | Multiple bulged bases | ||
| IL_8UPO_183 | UAA/GAN with extra cWW | ||
| IL_8UPO_184 | No text annotation | ||
| IL_8UPO_185 | Major groove intercalation | ||
| IL_8UPO_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8UPO_187 | tHS double platform | ||
| IL_8UPO_188 | Major groove intercalation | ||
| IL_8UPO_189 | No text annotation | ||
| IL_8UPO_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8UPO_191 | Symmetric double minor groove platform | ||
| IL_8UPO_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8UPO_020 | No text annotation | ||
| J3_8UPO_021 | No text annotation | ||
| J3_8UPO_022 | No text annotation | ||
| J3_8UPO_023 | No text annotation | ||
| J3_8UPO_024 | No text annotation | ||
| J3_8UPO_001 | No text annotation | ||
| J3_8UPO_002 | No text annotation | ||
| J3_8UPO_003 | No text annotation | ||
| J3_8UPO_025 | No text annotation | ||
| J3_8UPO_004 | No text annotation | ||
| J3_8UPO_005 | No text annotation | ||
| J3_8UPO_026 | No text annotation | ||
| J3_8UPO_006 | No text annotation | ||
| J3_8UPO_007 | No text annotation | ||
| J3_8UPO_027 | No text annotation | ||
| J3_8UPO_008 | No text annotation | ||
| J3_8UPO_028 | No text annotation | ||
| J3_8UPO_009 | No text annotation | ||
| J3_8UPO_029 | No text annotation | ||
| J3_8UPO_030 | No text annotation | ||
| J3_8UPO_031 | No text annotation | ||
| J3_8UPO_032 | No text annotation | ||
| J3_8UPO_033 | No text annotation | ||
| J3_8UPO_010 | No text annotation | ||
| J3_8UPO_011 | No text annotation | ||
| J3_8UPO_012 | No text annotation | ||
| J3_8UPO_013 | No text annotation | ||
| J3_8UPO_014 | No text annotation | ||
| J3_8UPO_034 | No text annotation | ||
| J3_8UPO_035 | No text annotation | ||
| J3_8UPO_015 | Kink-turn 3-way junction | ||
| J3_8UPO_036 | No text annotation | ||
| J3_8UPO_016 | No text annotation | ||
| J3_8UPO_017 | No text annotation | ||
| J3_8UPO_037 | No text annotation | ||
| J3_8UPO_018 | No text annotation | ||
| J3_8UPO_019 | No text annotation | ||
| J4_8UPO_001 | tRNA junction | ||
| J4_8UPO_002 | tRNA junction | ||
| J4_8UPO_003 | No text annotation | ||
| J4_8UPO_004 | No text annotation | ||
| J4_8UPO_005 | No text annotation | ||
| J4_8UPO_006 | No text annotation | ||
| J4_8UPO_007 | No text annotation | ||
| J4_8UPO_008 | No text annotation | ||
| J4_8UPO_009 | No text annotation | ||
| J4_8UPO_010 | No text annotation | ||
| J4_8UPO_011 | No text annotation | ||
| J4_8UPO_012 | No text annotation | ||
| J4_8UPO_013 | No text annotation | ||
| J4_8UPO_014 | No text annotation | ||
| J4_8UPO_015 | No text annotation | ||
| J5_8UPO_001 | No text annotation | ||
| J5_8UPO_002 | No text annotation | ||
| J5_8UPO_003 | No text annotation | ||
| J5_8UPO_004 | No text annotation | ||
| J5_8UPO_005 | No text annotation | ||
| J5_8UPO_006 | No text annotation | ||
| J5_8UPO_007 | No text annotation | ||
| J6_8UPO_001 | No text annotation | ||
| J7_8UPO_001 | No text annotation | ||
| J7_8UPO_002 | No text annotation |
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