HL_8UPO_064

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGCUAACGU

Length

9 nucleotides

Bulged bases

8UPO|1|a|U|958, 8UPO|1|a|C|961

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_064 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0704

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPO|1|a|G|954
8UPO|1|a|G|956
8UPO|1|a|C|957
8UPO|1|a|U|958
8UPO|1|a|A|959
8UPO|1|a|A|960
8UPO|1|a|C|961
8UPO|1|a|G|962
8UPO|1|a|U|963

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

5S ribosomal RNA; 5S rRNA

Chain v

50S ribosomal protein L16