HL_8UPO_088

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

8UPO|1|a|A|2031, 8UPO|1|a|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_088 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1045

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8UPO|1|a|G|2027
8UPO|1|a|U|2028
8UPO|1|a|G|2029
8UPO|1|a|A|2031
8UPO|1|a|G|2032
8UPO|1|a|A|2033
8UPO|1|a|U|2034
8UPO|1|a|G|2035
8UPO|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3