HL_8UPR_018

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8UPR|1|D|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPR_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1319

The information below is about HL_5J7L_012

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UPR|1|D|G|462
8UPR|1|D|U|463
8UPR|1|D|U|464
8UPR|1|D|A|465
8UPR|1|D|A|466
8UPR|1|D|U|467
8UPR|1|D|A|468
8UPR|1|D|C|469
8UPR|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains