8UPR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UPR_001 | No text annotation | ||
| HL_8UPR_002 | tRNA anticodon loop | ||
| HL_8UPR_003 | No text annotation | ||
| HL_8UPR_004 | No text annotation | ||
| HL_8UPR_005 | tRNA anticodon loop | ||
| HL_8UPR_006 | No text annotation | ||
| HL_8UPR_007 | No text annotation | ||
| HL_8UPR_008 | No text annotation | ||
| HL_8UPR_009 | GNRA | ||
| HL_8UPR_010 | GNRA | ||
| HL_8UPR_110 | No text annotation | ||
| HL_8UPR_011 | UNCG | ||
| HL_8UPR_012 | GNRA related | ||
| HL_8UPR_013 | GNRA | ||
| HL_8UPR_014 | No text annotation | ||
| HL_8UPR_015 | UNCG | ||
| HL_8UPR_016 | GNRA | ||
| HL_8UPR_017 | UNCG | ||
| HL_8UPR_018 | GNRA with extra near cWW | ||
| HL_8UPR_019 | tRNA D-loop | ||
| HL_8UPR_020 | GNRA-like with tWH | ||
| HL_8UPR_021 | No text annotation | ||
| HL_8UPR_022 | GNRA | ||
| HL_8UPR_023 | No text annotation | ||
| HL_8UPR_024 | No text annotation | ||
| HL_8UPR_025 | GNRA | ||
| HL_8UPR_026 | GNRA | ||
| HL_8UPR_027 | No text annotation | ||
| HL_8UPR_028 | GNRA | ||
| HL_8UPR_029 | No text annotation | ||
| HL_8UPR_030 | GNRA | ||
| HL_8UPR_031 | T-loop related | ||
| HL_8UPR_111 | No text annotation | ||
| HL_8UPR_032 | No text annotation | ||
| HL_8UPR_033 | GNRA | ||
| HL_8UPR_034 | GNRA | ||
| HL_8UPR_035 | T-loop with 3 stacked bulged bases | ||
| HL_8UPR_036 | No text annotation | ||
| HL_8UPR_037 | UNCG | ||
| HL_8UPR_038 | GNRA | ||
| HL_8UPR_039 | No text annotation | ||
| HL_8UPR_040 | No text annotation | ||
| HL_8UPR_041 | No text annotation | ||
| HL_8UPR_042 | UNCG | ||
| HL_8UPR_043 | No text annotation | ||
| HL_8UPR_044 | No text annotation | ||
| HL_8UPR_045 | No text annotation | ||
| HL_8UPR_046 | No text annotation | ||
| HL_8UPR_047 | T-loop with 2 stacked bulged bases | ||
| HL_8UPR_048 | No text annotation | ||
| HL_8UPR_049 | T-loop with unstacked turn | ||
| HL_8UPR_050 | No text annotation | ||
| HL_8UPR_051 | Pseudoknot geometry | ||
| HL_8UPR_052 | GNRA | ||
| HL_8UPR_053 | GNRA | ||
| HL_8UPR_054 | No text annotation | ||
| HL_8UPR_055 | T-loop with 2 stacked bulged bases | ||
| HL_8UPR_056 | No text annotation | ||
| HL_8UPR_057 | GNRA | ||
| HL_8UPR_058 | No text annotation | ||
| HL_8UPR_059 | GNRA with tandem sheared | ||
| HL_8UPR_060 | No text annotation | ||
| HL_8UPR_061 | No text annotation | ||
| HL_8UPR_062 | No text annotation | ||
| HL_8UPR_112 | No text annotation | ||
| HL_8UPR_063 | No text annotation | ||
| HL_8UPR_064 | No text annotation | ||
| HL_8UPR_065 | No text annotation | ||
| HL_8UPR_066 | No text annotation | ||
| HL_8UPR_067 | GNRA with tandem sheared | ||
| HL_8UPR_068 | No text annotation | ||
| HL_8UPR_069 | GNRA | ||
| HL_8UPR_070 | T-loop with 2 stacked bulged bases | ||
| HL_8UPR_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8UPR_072 | GNRA | ||
| HL_8UPR_073 | No text annotation | ||
| HL_8UPR_074 | Mini UNCG with extended bulge | ||
| HL_8UPR_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8UPR_076 | UNCG | ||
| HL_8UPR_077 | Mini UNCG | ||
| HL_8UPR_078 | No text annotation | ||
| HL_8UPR_079 | GNRA | ||
| HL_8UPR_080 | UNCG | ||
| HL_8UPR_113 | No text annotation | ||
| HL_8UPR_081 | No text annotation | ||
| HL_8UPR_082 | No text annotation | ||
| HL_8UPR_083 | No text annotation | ||
| HL_8UPR_084 | GNRA related | ||
| HL_8UPR_085 | GNRA variation | ||
| HL_8UPR_086 | No text annotation | ||
| HL_8UPR_087 | No text annotation | ||
| HL_8UPR_088 | No text annotation | ||
| HL_8UPR_089 | No text annotation | ||
| HL_8UPR_090 | No text annotation | ||
| HL_8UPR_091 | No text annotation | ||
| HL_8UPR_092 | No text annotation | ||
| HL_8UPR_093 | No text annotation | ||
| HL_8UPR_116 | No text annotation | ||
| HL_8UPR_094 | Pseudoknot geometry | ||
| HL_8UPR_095 | GNRA | ||
| HL_8UPR_096 | GNRA | ||
| HL_8UPR_097 | No text annotation | ||
| HL_8UPR_098 | No text annotation | ||
| HL_8UPR_099 | GNRA variation | ||
| HL_8UPR_100 | No text annotation | ||
| HL_8UPR_101 | GNRA | ||
| HL_8UPR_102 | GNRA | ||
| HL_8UPR_103 | Ribsomal LSU H95 | ||
| HL_8UPR_104 | No text annotation | ||
| HL_8UPR_105 | No text annotation | ||
| HL_8UPR_114 | UNCG variation | ||
| HL_8UPR_106 | No text annotation | ||
| HL_8UPR_107 | GNRA | ||
| HL_8UPR_115 | No text annotation | ||
| HL_8UPR_108 | No text annotation | ||
| HL_8UPR_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UPR_193 | No text annotation | ||
| IL_8UPR_194 | No text annotation | ||
| IL_8UPR_195 | No text annotation | ||
| IL_8UPR_196 | No text annotation | ||
| IL_8UPR_197 | No text annotation | ||
| IL_8UPR_198 | No text annotation | ||
| IL_8UPR_001 | Single bulged G | ||
| IL_8UPR_002 | Single bulged A | ||
| IL_8UPR_003 | No text annotation | ||
| IL_8UPR_004 | Minor groove platform | ||
| IL_8UPR_005 | Multiple bulged bases | ||
| IL_8UPR_006 | Minor groove platform with extra cWW | ||
| IL_8UPR_007 | Minor groove platform | ||
| IL_8UPR_199 | Single bulged G | ||
| IL_8UPR_008 | Single bulged G, near cWW | ||
| IL_8UPR_009 | Isolated non-canonical cWW pair | ||
| IL_8UPR_010 | Minor groove platform related | ||
| IL_8UPR_011 | Isolated cWH basepair | ||
| IL_8UPR_200 | No text annotation | ||
| IL_8UPR_012 | tWH-tWH-tHW-tHW | ||
| IL_8UPR_013 | No text annotation | ||
| IL_8UPR_014 | Kink-turn with non-sequential stacking | ||
| IL_8UPR_015 | No text annotation | ||
| IL_8UPR_016 | C-loop | ||
| IL_8UPR_017 | Single bulged U | ||
| IL_8UPR_018 | C-loop | ||
| IL_8UPR_019 | Single bulged G | ||
| IL_8UPR_020 | No text annotation | ||
| IL_8UPR_021 | No text annotation | ||
| IL_8UPR_022 | tSH-tHW-tWW | ||
| IL_8UPR_023 | No text annotation | ||
| IL_8UPR_024 | SSU/LSU pseudoknot | ||
| IL_8UPR_025 | Kink-turn related | ||
| IL_8UPR_026 | No text annotation | ||
| IL_8UPR_027 | tSH-tWH-tHS | ||
| IL_8UPR_028 | Major groove platform | ||
| IL_8UPR_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8UPR_030 | No text annotation | ||
| IL_8UPR_031 | Major groove platform; stack outside cWW | ||
| IL_8UPR_032 | Single stack bend | ||
| IL_8UPR_033 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_201 | Triple non-canonical cWW pairs | ||
| IL_8UPR_034 | No text annotation | ||
| IL_8UPR_035 | Kink-turn | ||
| IL_8UPR_036 | Left turn | ||
| IL_8UPR_037 | tSH-tWH-tHS | ||
| IL_8UPR_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8UPR_039 | Single bulged A | ||
| IL_8UPR_040 | Single bulged G | ||
| IL_8UPR_041 | Minor groove platform | ||
| IL_8UPR_042 | No text annotation | ||
| IL_8UPR_043 | Minor groove platform | ||
| IL_8UPR_208 | Single stack bend | ||
| IL_8UPR_044 | No text annotation | ||
| IL_8UPR_202 | No text annotation | ||
| IL_8UPR_045 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_046 | Single bulged U | ||
| IL_8UPR_047 | Stack and bulge | ||
| IL_8UPR_048 | Isolated cWS basepair | ||
| IL_8UPR_049 | Minor groove platform | ||
| IL_8UPR_050 | Single bulged A | ||
| IL_8UPR_051 | Isolated non-canonical cWW pair | ||
| IL_8UPR_052 | No text annotation | ||
| IL_8UPR_053 | Minor groove platform | ||
| IL_8UPR_054 | No text annotation | ||
| IL_8UPR_055 | No text annotation | ||
| IL_8UPR_056 | 180 degree turn | ||
| IL_8UPR_057 | Double sheared with non-canonical cWW | ||
| IL_8UPR_058 | No text annotation | ||
| IL_8UPR_059 | No text annotation | ||
| IL_8UPR_060 | No text annotation | ||
| IL_8UPR_061 | Partly complementary | ||
| IL_8UPR_062 | Isolated non-canonical cWW pair | ||
| IL_8UPR_063 | Double sheared | ||
| IL_8UPR_064 | Triple sheared related | ||
| IL_8UPR_065 | Single bulged A | ||
| IL_8UPR_066 | No text annotation | ||
| IL_8UPR_067 | Triple sheared with non-canonical cWW | ||
| IL_8UPR_068 | Single bulged A | ||
| IL_8UPR_069 | Minor groove platform | ||
| IL_8UPR_070 | Kink-turn | ||
| IL_8UPR_071 | Single stack bend | ||
| IL_8UPR_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UPR_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8UPR_074 | No text annotation | ||
| IL_8UPR_075 | No text annotation | ||
| IL_8UPR_076 | No text annotation | ||
| IL_8UPR_077 | No text annotation | ||
| IL_8UPR_078 | Double sheared | ||
| IL_8UPR_079 | Isolated non-canonical cWW pair | ||
| IL_8UPR_080 | AAA cross-strand stack | ||
| IL_8UPR_081 | No text annotation | ||
| IL_8UPR_082 | tHW-tHW cross-strand stack | ||
| IL_8UPR_083 | Single bulged A | ||
| IL_8UPR_084 | Single bulged G | ||
| IL_8UPR_085 | Triple sheared | ||
| IL_8UPR_086 | Major groove platform | ||
| IL_8UPR_087 | Multiple bulged bases | ||
| IL_8UPR_088 | Single stack bend | ||
| IL_8UPR_089 | 90 degree turn | ||
| IL_8UPR_203 | No text annotation | ||
| IL_8UPR_090 | Stack outside cWW | ||
| IL_8UPR_091 | Single stack bend | ||
| IL_8UPR_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8UPR_093 | Single bulged G | ||
| IL_8UPR_094 | C-loop with bulged stacked A's | ||
| IL_8UPR_095 | Isolated non-canonical cWW pair | ||
| IL_8UPR_096 | Double sheared with non-canonical cWW | ||
| IL_8UPR_204 | No text annotation | ||
| IL_8UPR_209 | Single bulged A | ||
| IL_8UPR_097 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_098 | Single stack bend | ||
| IL_8UPR_099 | Single bulged C | ||
| IL_8UPR_100 | UAA/GAN | ||
| IL_8UPR_101 | SSU/LSU pseudoknot | ||
| IL_8UPR_102 | Single bulged U | ||
| IL_8UPR_103 | Kink-turn related | ||
| IL_8UPR_104 | No text annotation | ||
| IL_8UPR_105 | Isolated non-canonical cWW pair | ||
| IL_8UPR_106 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_210 | No text annotation | ||
| IL_8UPR_107 | No text annotation | ||
| IL_8UPR_108 | No text annotation | ||
| IL_8UPR_109 | No text annotation | ||
| IL_8UPR_110 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_111 | Isolated cWS basepair | ||
| IL_8UPR_112 | No text annotation | ||
| IL_8UPR_113 | Kink-turn | ||
| IL_8UPR_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UPR_115 | Major groove platform; stack outside cWW | ||
| IL_8UPR_116 | C-loop | ||
| IL_8UPR_117 | UAA/GAN | ||
| IL_8UPR_118 | tSH-tWH-tHS | ||
| IL_8UPR_119 | No text annotation | ||
| IL_8UPR_120 | Single stack bend | ||
| IL_8UPR_121 | Single stack bend | ||
| IL_8UPR_205 | No text annotation | ||
| IL_8UPR_122 | No text annotation | ||
| IL_8UPR_123 | UAA/GAN | ||
| IL_8UPR_124 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_125 | tSH-tHW | ||
| IL_8UPR_126 | Single bulged U | ||
| IL_8UPR_127 | No text annotation | ||
| IL_8UPR_128 | tSH-tWH-tHS | ||
| IL_8UPR_129 | 180 degree turn | ||
| IL_8UPR_130 | Single bulged A | ||
| IL_8UPR_131 | UAA/GAN variation | ||
| IL_8UPR_132 | No text annotation | ||
| IL_8UPR_133 | Isolated tWW turn | ||
| IL_8UPR_134 | Major groove platform; stack outside cWW | ||
| IL_8UPR_206 | No text annotation | ||
| IL_8UPR_135 | Intercalated tWH | ||
| IL_8UPR_136 | tSH-tSH-tHH-tHS | ||
| IL_8UPR_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8UPR_138 | Triple sheared | ||
| IL_8UPR_139 | Single bulged C | ||
| IL_8UPR_140 | Single bulged A | ||
| IL_8UPR_141 | Kink-turn related | ||
| IL_8UPR_142 | Minor groove platform, major groove intercalation | ||
| IL_8UPR_143 | Major groove intercalation | ||
| IL_8UPR_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8UPR_207 | No text annotation | ||
| IL_8UPR_145 | UAA/GAN related | ||
| IL_8UPR_146 | Intercalated cWW | ||
| IL_8UPR_147 | Bulged stacked bases | ||
| IL_8UPR_148 | No text annotation | ||
| IL_8UPR_149 | Major groove platform | ||
| IL_8UPR_150 | No text annotation | ||
| IL_8UPR_151 | No text annotation | ||
| IL_8UPR_152 | No text annotation | ||
| IL_8UPR_153 | Minor groove platform | ||
| IL_8UPR_154 | Isolated tHS basepair with bulges | ||
| IL_8UPR_155 | Isolated non-canonical cWW pair | ||
| IL_8UPR_156 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_157 | Isolated cWH basepair | ||
| IL_8UPR_158 | Isolated non-canonical cWW pair | ||
| IL_8UPR_159 | Tandem non-canonical cWW pairs | ||
| IL_8UPR_160 | Isolated non-canonical cWW pair | ||
| IL_8UPR_161 | Isolated non-canonical cWW pair | ||
| IL_8UPR_162 | No text annotation | ||
| IL_8UPR_163 | Isolated non-canonical cWW pair | ||
| IL_8UPR_164 | Kink-turn | ||
| IL_8UPR_165 | Single bulged U | ||
| IL_8UPR_166 | Double sheared | ||
| IL_8UPR_167 | No text annotation | ||
| IL_8UPR_168 | No text annotation | ||
| IL_8UPR_169 | No text annotation | ||
| IL_8UPR_170 | Major groove minor groove platform with extra cWW | ||
| IL_8UPR_171 | Double sheared with non-canonical cWW | ||
| IL_8UPR_172 | No text annotation | ||
| IL_8UPR_173 | Isolated non-canonical cWW with bulges | ||
| IL_8UPR_174 | No text annotation | ||
| IL_8UPR_175 | Major groove platform with intercalation | ||
| IL_8UPR_176 | No text annotation | ||
| IL_8UPR_177 | Single bulged A | ||
| IL_8UPR_178 | tSH-tHS-tHW | ||
| IL_8UPR_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8UPR_180 | C-loop | ||
| IL_8UPR_181 | UAA/GAN related, with intercalation | ||
| IL_8UPR_182 | Multiple bulged bases | ||
| IL_8UPR_183 | UAA/GAN with extra cWW | ||
| IL_8UPR_184 | No text annotation | ||
| IL_8UPR_185 | Major groove intercalation | ||
| IL_8UPR_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8UPR_187 | tHS double platform | ||
| IL_8UPR_188 | Major groove intercalation | ||
| IL_8UPR_189 | No text annotation | ||
| IL_8UPR_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8UPR_191 | Symmetric double minor groove platform | ||
| IL_8UPR_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8UPR_020 | No text annotation | ||
| J3_8UPR_021 | No text annotation | ||
| J3_8UPR_022 | No text annotation | ||
| J3_8UPR_023 | No text annotation | ||
| J3_8UPR_024 | No text annotation | ||
| J3_8UPR_001 | No text annotation | ||
| J3_8UPR_002 | No text annotation | ||
| J3_8UPR_003 | No text annotation | ||
| J3_8UPR_025 | No text annotation | ||
| J3_8UPR_004 | No text annotation | ||
| J3_8UPR_005 | No text annotation | ||
| J3_8UPR_026 | No text annotation | ||
| J3_8UPR_006 | No text annotation | ||
| J3_8UPR_007 | No text annotation | ||
| J3_8UPR_027 | No text annotation | ||
| J3_8UPR_008 | No text annotation | ||
| J3_8UPR_028 | No text annotation | ||
| J3_8UPR_009 | No text annotation | ||
| J3_8UPR_029 | No text annotation | ||
| J3_8UPR_030 | No text annotation | ||
| J3_8UPR_031 | No text annotation | ||
| J3_8UPR_032 | No text annotation | ||
| J3_8UPR_033 | No text annotation | ||
| J3_8UPR_010 | No text annotation | ||
| J3_8UPR_011 | No text annotation | ||
| J3_8UPR_012 | No text annotation | ||
| J3_8UPR_013 | No text annotation | ||
| J3_8UPR_014 | No text annotation | ||
| J3_8UPR_034 | No text annotation | ||
| J3_8UPR_035 | No text annotation | ||
| J3_8UPR_015 | Kink-turn 3-way junction | ||
| J3_8UPR_036 | No text annotation | ||
| J3_8UPR_016 | No text annotation | ||
| J3_8UPR_017 | No text annotation | ||
| J3_8UPR_037 | No text annotation | ||
| J3_8UPR_018 | No text annotation | ||
| J3_8UPR_019 | No text annotation | ||
| J4_8UPR_001 | tRNA junction | ||
| J4_8UPR_002 | tRNA junction | ||
| J4_8UPR_003 | No text annotation | ||
| J4_8UPR_004 | No text annotation | ||
| J4_8UPR_005 | No text annotation | ||
| J4_8UPR_006 | No text annotation | ||
| J4_8UPR_007 | No text annotation | ||
| J4_8UPR_008 | No text annotation | ||
| J4_8UPR_009 | No text annotation | ||
| J4_8UPR_010 | No text annotation | ||
| J4_8UPR_011 | No text annotation | ||
| J4_8UPR_012 | No text annotation | ||
| J4_8UPR_013 | No text annotation | ||
| J4_8UPR_014 | No text annotation | ||
| J4_8UPR_015 | No text annotation | ||
| J5_8UPR_001 | No text annotation | ||
| J5_8UPR_002 | No text annotation | ||
| J5_8UPR_003 | No text annotation | ||
| J5_8UPR_004 | No text annotation | ||
| J5_8UPR_005 | No text annotation | ||
| J5_8UPR_006 | No text annotation | ||
| J5_8UPR_007 | No text annotation | ||
| J6_8UPR_001 | No text annotation | ||
| J7_8UPR_001 | No text annotation | ||
| J7_8UPR_002 | No text annotation |
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