HL_8UQL_066

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

8UQL|1|a|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQL_066 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3833

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8UQL|1|a|U|1065
8UQL|1|a|U|1066
8UQL|1|a|A|1067
8UQL|1|a|G|1068
8UQL|1|a|A|1069
8UQL|1|a|A|1070
8UQL|1|a|G|1071
8UQL|1|a|C|1072
8UQL|1|a|A|1073

Current chains

Chain a

23S rRNA

Nearby chains