HL_8UQL_087

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8UQL|1|a|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQL_087 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0712

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UQL|1|a|G|1949
8UQL|1|a|G|1950
8UQL|1|a|U|1951
8UQL|1|a|A|1952
8UQL|1|a|A|1953
8UQL|1|a|G|1954
8UQL|1|a|U|1955
8UQL|1|a|U|1956
8UQL|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain t

50S ribosomal protein L14