HL_8UQM_005
3D structure
- PDB id
- 8UQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UQM_005 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.3444
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8UQM|1|B|G|31
8UQM|1|B|C|32
8UQM|1|B|U|33
8UQM|1|B|C|34
8UQM|1|B|A|35
8UQM|1|B|U|36
8UQM|1|B|A|37
8UQM|1|B|A|38
8UQM|1|B|C|39
Current chains
- Chain B
- E-site and P-site fMet-tRNA
Nearby chains
- Chain 7
- mRNA with 24 nt long spacer
- Chain A
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein S9
Coloring options: