8UQM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UQM_001 | No text annotation | ||
| HL_8UQM_002 | tRNA anticodon loop | ||
| HL_8UQM_003 | No text annotation | ||
| HL_8UQM_004 | No text annotation | ||
| HL_8UQM_005 | tRNA anticodon loop | ||
| HL_8UQM_006 | No text annotation | ||
| HL_8UQM_007 | No text annotation | ||
| HL_8UQM_008 | No text annotation | ||
| HL_8UQM_009 | GNRA | ||
| HL_8UQM_010 | GNRA | ||
| HL_8UQM_110 | No text annotation | ||
| HL_8UQM_011 | UNCG | ||
| HL_8UQM_012 | GNRA related | ||
| HL_8UQM_013 | GNRA | ||
| HL_8UQM_014 | No text annotation | ||
| HL_8UQM_015 | UNCG | ||
| HL_8UQM_016 | GNRA | ||
| HL_8UQM_017 | UNCG | ||
| HL_8UQM_018 | GNRA wlth extra near cWW | ||
| HL_8UQM_019 | No text annotation | ||
| HL_8UQM_020 | GNRA-like with tWH | ||
| HL_8UQM_021 | No text annotation | ||
| HL_8UQM_022 | GNRA | ||
| HL_8UQM_023 | No text annotation | ||
| HL_8UQM_024 | No text annotation | ||
| HL_8UQM_025 | GNRA | ||
| HL_8UQM_026 | GNRA | ||
| HL_8UQM_027 | No text annotation | ||
| HL_8UQM_028 | GNRA | ||
| HL_8UQM_029 | No text annotation | ||
| HL_8UQM_030 | GNRA | ||
| HL_8UQM_031 | T-loop related | ||
| HL_8UQM_111 | No text annotation | ||
| HL_8UQM_032 | No text annotation | ||
| HL_8UQM_033 | GNRA | ||
| HL_8UQM_034 | GNRA | ||
| HL_8UQM_035 | T-loop with 3 stacked bulged bases | ||
| HL_8UQM_036 | No text annotation | ||
| HL_8UQM_037 | UNCG | ||
| HL_8UQM_038 | GNRA | ||
| HL_8UQM_039 | No text annotation | ||
| HL_8UQM_040 | No text annotation | ||
| HL_8UQM_041 | No text annotation | ||
| HL_8UQM_042 | UNCG | ||
| HL_8UQM_043 | No text annotation | ||
| HL_8UQM_044 | No text annotation | ||
| HL_8UQM_045 | No text annotation | ||
| HL_8UQM_046 | No text annotation | ||
| HL_8UQM_047 | T-loop with 2 stacked bulged bases | ||
| HL_8UQM_048 | No text annotation | ||
| HL_8UQM_049 | T-loop with unstacked turn | ||
| HL_8UQM_050 | No text annotation | ||
| HL_8UQM_051 | Pseudoknot geometry | ||
| HL_8UQM_052 | GNRA | ||
| HL_8UQM_053 | GNRA | ||
| HL_8UQM_054 | No text annotation | ||
| HL_8UQM_055 | T-loop with 2 stacked bulged bases | ||
| HL_8UQM_056 | No text annotation | ||
| HL_8UQM_057 | GNRA | ||
| HL_8UQM_058 | No text annotation | ||
| HL_8UQM_059 | GNRA wlth tandem sheared | ||
| HL_8UQM_060 | No text annotation | ||
| HL_8UQM_061 | No text annotation | ||
| HL_8UQM_062 | No text annotation | ||
| HL_8UQM_112 | No text annotation | ||
| HL_8UQM_063 | No text annotation | ||
| HL_8UQM_064 | No text annotation | ||
| HL_8UQM_065 | No text annotation | ||
| HL_8UQM_066 | No text annotation | ||
| HL_8UQM_067 | GNRA wlth tandem sheared | ||
| HL_8UQM_068 | No text annotation | ||
| HL_8UQM_069 | GNRA | ||
| HL_8UQM_070 | T-loop with 2 stacked bulged bases | ||
| HL_8UQM_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8UQM_072 | GNRA | ||
| HL_8UQM_073 | No text annotation | ||
| HL_8UQM_074 | Mini UNCG with extended bulge | ||
| HL_8UQM_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8UQM_076 | UNCG | ||
| HL_8UQM_077 | Mini UNCG | ||
| HL_8UQM_078 | No text annotation | ||
| HL_8UQM_079 | GNRA | ||
| HL_8UQM_080 | UNCG | ||
| HL_8UQM_113 | No text annotation | ||
| HL_8UQM_081 | No text annotation | ||
| HL_8UQM_082 | No text annotation | ||
| HL_8UQM_083 | No text annotation | ||
| HL_8UQM_084 | GNRA related | ||
| HL_8UQM_085 | GNRA variation | ||
| HL_8UQM_086 | No text annotation | ||
| HL_8UQM_087 | No text annotation | ||
| HL_8UQM_088 | No text annotation | ||
| HL_8UQM_089 | No text annotation | ||
| HL_8UQM_090 | No text annotation | ||
| HL_8UQM_091 | No text annotation | ||
| HL_8UQM_092 | No text annotation | ||
| HL_8UQM_093 | No text annotation | ||
| HL_8UQM_116 | No text annotation | ||
| HL_8UQM_094 | Pseudoknot geometry | ||
| HL_8UQM_095 | GNRA | ||
| HL_8UQM_096 | GNRA | ||
| HL_8UQM_097 | No text annotation | ||
| HL_8UQM_098 | No text annotation | ||
| HL_8UQM_099 | GNRA variation | ||
| HL_8UQM_100 | No text annotation | ||
| HL_8UQM_101 | GNRA | ||
| HL_8UQM_102 | GNRA | ||
| HL_8UQM_103 | Ribsomal LSU H95 | ||
| HL_8UQM_104 | No text annotation | ||
| HL_8UQM_105 | No text annotation | ||
| HL_8UQM_114 | UNCG variation | ||
| HL_8UQM_106 | No text annotation | ||
| HL_8UQM_107 | GNRA | ||
| HL_8UQM_115 | No text annotation | ||
| HL_8UQM_108 | No text annotation | ||
| HL_8UQM_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UQM_193 | No text annotation | ||
| IL_8UQM_194 | No text annotation | ||
| IL_8UQM_195 | No text annotation | ||
| IL_8UQM_196 | No text annotation | ||
| IL_8UQM_197 | No text annotation | ||
| IL_8UQM_198 | No text annotation | ||
| IL_8UQM_199 | No text annotation | ||
| IL_8UQM_001 | Single bulged G | ||
| IL_8UQM_002 | Single bulged A | ||
| IL_8UQM_003 | No text annotation | ||
| IL_8UQM_004 | Minor groove platform | ||
| IL_8UQM_005 | Multiple bulged bases | ||
| IL_8UQM_006 | Minor groove platform with extra cWW | ||
| IL_8UQM_007 | Minor groove platform | ||
| IL_8UQM_200 | Single bulged G | ||
| IL_8UQM_008 | Single bulged G, near cWW | ||
| IL_8UQM_009 | Isolated non-canonical cWW pair | ||
| IL_8UQM_010 | Minor groove platform related | ||
| IL_8UQM_011 | Isolated cWH basepair | ||
| IL_8UQM_201 | No text annotation | ||
| IL_8UQM_012 | tWH-tWH-tHW-tHW | ||
| IL_8UQM_013 | No text annotation | ||
| IL_8UQM_014 | Kink-turn with non-sequential stacking | ||
| IL_8UQM_015 | No text annotation | ||
| IL_8UQM_016 | C-loop | ||
| IL_8UQM_017 | Single bulged U | ||
| IL_8UQM_018 | C-loop | ||
| IL_8UQM_019 | Single bulged G | ||
| IL_8UQM_020 | No text annotation | ||
| IL_8UQM_021 | No text annotation | ||
| IL_8UQM_022 | tSH-tHW-tWW | ||
| IL_8UQM_023 | No text annotation | ||
| IL_8UQM_024 | SSU/LSU pseudoknot | ||
| IL_8UQM_025 | Kink-turn related | ||
| IL_8UQM_026 | No text annotation | ||
| IL_8UQM_027 | tSH-tHW-tHS | ||
| IL_8UQM_028 | Major groove platform | ||
| IL_8UQM_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8UQM_030 | No text annotation | ||
| IL_8UQM_031 | Major groove platform; stack outside cWW | ||
| IL_8UQM_032 | Single stack bend | ||
| IL_8UQM_033 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_202 | Triple non-canonical cWW pairs | ||
| IL_8UQM_034 | No text annotation | ||
| IL_8UQM_035 | Kink-turn | ||
| IL_8UQM_036 | Left turn | ||
| IL_8UQM_037 | tSH-tHW-tHS | ||
| IL_8UQM_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8UQM_039 | Single bulged A | ||
| IL_8UQM_040 | Single bulged G | ||
| IL_8UQM_041 | Minor groove platform | ||
| IL_8UQM_042 | No text annotation | ||
| IL_8UQM_043 | Minor groove platform | ||
| IL_8UQM_209 | Single stack bend | ||
| IL_8UQM_044 | No text annotation | ||
| IL_8UQM_203 | No text annotation | ||
| IL_8UQM_045 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_046 | Single bulged U | ||
| IL_8UQM_047 | Stack and bulge | ||
| IL_8UQM_048 | Isolated cWS basepair | ||
| IL_8UQM_049 | Minor groove platform | ||
| IL_8UQM_050 | Single bulged A | ||
| IL_8UQM_051 | Isolated non-canonical cWW pair | ||
| IL_8UQM_052 | No text annotation | ||
| IL_8UQM_053 | Minor groove platform | ||
| IL_8UQM_054 | No text annotation | ||
| IL_8UQM_055 | No text annotation | ||
| IL_8UQM_056 | 180 degree turn | ||
| IL_8UQM_057 | Double sheared with non-canonical cWW | ||
| IL_8UQM_058 | No text annotation | ||
| IL_8UQM_059 | No text annotation | ||
| IL_8UQM_060 | No text annotation | ||
| IL_8UQM_061 | Partly complementary | ||
| IL_8UQM_062 | Isolated non-canonical cWW pair | ||
| IL_8UQM_063 | Double sheared | ||
| IL_8UQM_064 | Triple sheared related | ||
| IL_8UQM_065 | Single bulged A | ||
| IL_8UQM_066 | No text annotation | ||
| IL_8UQM_067 | Triple sheared with non-canonical cWW | ||
| IL_8UQM_068 | Single bulged A | ||
| IL_8UQM_069 | Minor groove platform | ||
| IL_8UQM_070 | No text annotation | ||
| IL_8UQM_071 | Single stack bend | ||
| IL_8UQM_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UQM_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8UQM_074 | No text annotation | ||
| IL_8UQM_075 | No text annotation | ||
| IL_8UQM_076 | No text annotation | ||
| IL_8UQM_077 | No text annotation | ||
| IL_8UQM_078 | Double sheared | ||
| IL_8UQM_079 | Isolated non-canonical cWW pair | ||
| IL_8UQM_080 | AAA cross-strand stack | ||
| IL_8UQM_081 | No text annotation | ||
| IL_8UQM_082 | tHW-tHW cross-strand stack | ||
| IL_8UQM_083 | Single bulged A | ||
| IL_8UQM_084 | Single bulged G | ||
| IL_8UQM_085 | Triple sheared | ||
| IL_8UQM_086 | Major groove platform | ||
| IL_8UQM_087 | Multiple bulged bases | ||
| IL_8UQM_088 | Single stack bend | ||
| IL_8UQM_089 | 90 degree turn | ||
| IL_8UQM_204 | No text annotation | ||
| IL_8UQM_090 | Stack outside cWW | ||
| IL_8UQM_091 | Single stack bend | ||
| IL_8UQM_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8UQM_093 | Single bulged G | ||
| IL_8UQM_094 | C-loop with bulged stacked A's | ||
| IL_8UQM_095 | Isolated non-canonical cWW pair | ||
| IL_8UQM_096 | Double sheared with non-canonical cWW | ||
| IL_8UQM_205 | No text annotation | ||
| IL_8UQM_210 | Single bulged A | ||
| IL_8UQM_097 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_098 | Single stack bend | ||
| IL_8UQM_099 | Single bulged C | ||
| IL_8UQM_100 | UAA/GAN | ||
| IL_8UQM_101 | SSU/LSU pseudoknot | ||
| IL_8UQM_102 | Single bulged U | ||
| IL_8UQM_103 | Kink-turn related | ||
| IL_8UQM_104 | No text annotation | ||
| IL_8UQM_105 | Isolated non-canonical cWW pair | ||
| IL_8UQM_106 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_211 | No text annotation | ||
| IL_8UQM_107 | No text annotation | ||
| IL_8UQM_108 | No text annotation | ||
| IL_8UQM_109 | Major groove platform | ||
| IL_8UQM_110 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_111 | Isolated cWS basepair | ||
| IL_8UQM_112 | No text annotation | ||
| IL_8UQM_113 | Kink-turn | ||
| IL_8UQM_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8UQM_115 | Major groove platform; stack outside cWW | ||
| IL_8UQM_116 | C-loop | ||
| IL_8UQM_117 | UAA/GAN | ||
| IL_8UQM_118 | tSH-tHW-tHS | ||
| IL_8UQM_119 | No text annotation | ||
| IL_8UQM_120 | Single stack bend | ||
| IL_8UQM_121 | Single stack bend | ||
| IL_8UQM_206 | No text annotation | ||
| IL_8UQM_122 | No text annotation | ||
| IL_8UQM_123 | UAA/GAN | ||
| IL_8UQM_124 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_125 | tSH-tHW | ||
| IL_8UQM_126 | Single bulged U | ||
| IL_8UQM_127 | No text annotation | ||
| IL_8UQM_128 | tSH-tHW-tHS | ||
| IL_8UQM_129 | 180 degree turn | ||
| IL_8UQM_130 | Single bulged A | ||
| IL_8UQM_131 | UAA/GAN variation | ||
| IL_8UQM_132 | No text annotation | ||
| IL_8UQM_133 | Isolated tWW turn | ||
| IL_8UQM_134 | Major groove platform; stack outside cWW | ||
| IL_8UQM_207 | No text annotation | ||
| IL_8UQM_135 | Intercalated tWH | ||
| IL_8UQM_136 | tSH-tSH-tHH-tHS | ||
| IL_8UQM_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8UQM_138 | Triple sheared | ||
| IL_8UQM_139 | Single bulged C | ||
| IL_8UQM_140 | Single bulged A | ||
| IL_8UQM_141 | Kink-turn related | ||
| IL_8UQM_142 | Minor groove platform, major groove intercalation | ||
| IL_8UQM_143 | Major groove intercalation | ||
| IL_8UQM_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8UQM_208 | No text annotation | ||
| IL_8UQM_145 | UAA/GAN related | ||
| IL_8UQM_146 | Intercalated cWW | ||
| IL_8UQM_147 | Bulged stacked bases | ||
| IL_8UQM_148 | No text annotation | ||
| IL_8UQM_149 | Major groove platform | ||
| IL_8UQM_150 | No text annotation | ||
| IL_8UQM_151 | No text annotation | ||
| IL_8UQM_152 | No text annotation | ||
| IL_8UQM_153 | Minor groove platform | ||
| IL_8UQM_154 | Isolated tHS basepair with bulges | ||
| IL_8UQM_155 | Isolated non-canonical cWW pair | ||
| IL_8UQM_156 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_157 | Isolated cWH basepair | ||
| IL_8UQM_158 | Isolated non-canonical cWW pair | ||
| IL_8UQM_159 | Tandem non-canonical cWW pairs | ||
| IL_8UQM_160 | Isolated non-canonical cWW pair | ||
| IL_8UQM_161 | Isolated non-canonical cWW pair | ||
| IL_8UQM_162 | No text annotation | ||
| IL_8UQM_163 | Isolated non-canonical cWW pair | ||
| IL_8UQM_164 | Kink-turn | ||
| IL_8UQM_165 | Single bulged U | ||
| IL_8UQM_166 | Double sheared | ||
| IL_8UQM_167 | No text annotation | ||
| IL_8UQM_168 | No text annotation | ||
| IL_8UQM_169 | No text annotation | ||
| IL_8UQM_170 | Major groove minor groove platform with extra cWW | ||
| IL_8UQM_171 | Double sheared with non-canonical cWW | ||
| IL_8UQM_172 | No text annotation | ||
| IL_8UQM_173 | Isolated non-canonical cWW with bulges | ||
| IL_8UQM_174 | No text annotation | ||
| IL_8UQM_175 | Major groove platform with intercalation | ||
| IL_8UQM_176 | No text annotation | ||
| IL_8UQM_177 | Single bulged A | ||
| IL_8UQM_178 | tSH-tHS-tHW | ||
| IL_8UQM_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8UQM_180 | C-loop | ||
| IL_8UQM_181 | UAA/GAN related, with intercalation | ||
| IL_8UQM_182 | Multiple bulged bases | ||
| IL_8UQM_183 | UAA/GAN with extra cWW | ||
| IL_8UQM_184 | No text annotation | ||
| IL_8UQM_185 | Major groove intercalation | ||
| IL_8UQM_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8UQM_187 | tHS double platform | ||
| IL_8UQM_188 | Major groove intercalation | ||
| IL_8UQM_189 | No text annotation | ||
| IL_8UQM_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8UQM_191 | Symmetric double minor groove platform | ||
| IL_8UQM_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8UQM_020 | No text annotation | ||
| J3_8UQM_021 | No text annotation | ||
| J3_8UQM_022 | No text annotation | ||
| J3_8UQM_023 | No text annotation | ||
| J3_8UQM_024 | No text annotation | ||
| J3_8UQM_001 | No text annotation | ||
| J3_8UQM_002 | No text annotation | ||
| J3_8UQM_003 | No text annotation | ||
| J3_8UQM_025 | No text annotation | ||
| J3_8UQM_004 | No text annotation | ||
| J3_8UQM_005 | No text annotation | ||
| J3_8UQM_026 | No text annotation | ||
| J3_8UQM_006 | No text annotation | ||
| J3_8UQM_007 | No text annotation | ||
| J3_8UQM_027 | No text annotation | ||
| J3_8UQM_008 | No text annotation | ||
| J3_8UQM_028 | No text annotation | ||
| J3_8UQM_009 | No text annotation | ||
| J3_8UQM_029 | No text annotation | ||
| J3_8UQM_030 | No text annotation | ||
| J3_8UQM_031 | No text annotation | ||
| J3_8UQM_032 | No text annotation | ||
| J3_8UQM_033 | No text annotation | ||
| J3_8UQM_010 | No text annotation | ||
| J3_8UQM_011 | No text annotation | ||
| J3_8UQM_012 | No text annotation | ||
| J3_8UQM_013 | No text annotation | ||
| J3_8UQM_014 | No text annotation | ||
| J3_8UQM_034 | No text annotation | ||
| J3_8UQM_035 | No text annotation | ||
| J3_8UQM_015 | Kink-turn 3-way junction | ||
| J3_8UQM_036 | No text annotation | ||
| J3_8UQM_016 | No text annotation | ||
| J3_8UQM_017 | No text annotation | ||
| J3_8UQM_037 | No text annotation | ||
| J3_8UQM_018 | No text annotation | ||
| J3_8UQM_019 | No text annotation | ||
| J4_8UQM_001 | tRNA junction | ||
| J4_8UQM_002 | tRNA junction | ||
| J4_8UQM_003 | No text annotation | ||
| J4_8UQM_004 | No text annotation | ||
| J4_8UQM_005 | No text annotation | ||
| J4_8UQM_006 | No text annotation | ||
| J4_8UQM_007 | No text annotation | ||
| J4_8UQM_008 | No text annotation | ||
| J4_8UQM_009 | No text annotation | ||
| J4_8UQM_010 | No text annotation | ||
| J4_8UQM_011 | No text annotation | ||
| J4_8UQM_012 | No text annotation | ||
| J4_8UQM_013 | No text annotation | ||
| J4_8UQM_014 | No text annotation | ||
| J4_8UQM_015 | No text annotation | ||
| J5_8UQM_001 | No text annotation | ||
| J5_8UQM_002 | No text annotation | ||
| J5_8UQM_003 | No text annotation | ||
| J5_8UQM_004 | No text annotation | ||
| J5_8UQM_005 | No text annotation | ||
| J5_8UQM_006 | No text annotation | ||
| J5_8UQM_007 | No text annotation | ||
| J6_8UQM_001 | No text annotation | ||
| J7_8UQM_001 | No text annotation | ||
| J7_8UQM_002 | No text annotation |
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