HL_8UQP_014
3D structure
- PDB id
- 8UQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UQP_014 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.0774
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8UQP|1|D|A|320
8UQP|1|D|A|321
8UQP|1|D|C|322
8UQP|1|D|U|323
8UQP|1|D|G|324
8UQP|1|D|A|325
8UQP|1|D|G|326
8UQP|1|D|A|327
8UQP|1|D|C|328
8UQP|1|D|A|329
8UQP|1|D|C|330
8UQP|1|D|G|331
8UQP|1|D|G|332
8UQP|1|D|U|333
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
- Chain U
- 30S ribosomal protein S16
Coloring options: