HL_8UQP_031

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8UQP|1|D|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQP_031 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0863

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8UQP|1|D|G|1089
8UQP|1|D|U|1090
8UQP|1|D|U|1091
8UQP|1|D|A|1092
8UQP|1|D|A|1093
8UQP|1|D|G|1094
8UQP|1|D|U|1095
8UQP|1|D|C|1096

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain M

30S ribosomal protein S7