HL_8URH_061

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8URH|1|a|A|781, 8URH|1|a|G|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URH_061 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0851

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8URH|1|a|U|779
8URH|1|a|G|780
8URH|1|a|A|781
8URH|1|a|A|782
8URH|1|a|A|783
8URH|1|a|G|784
8URH|1|a|G|785

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2