8URH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8URH_001 | No text annotation | ||
| HL_8URH_002 | tRNA anticodon loop | ||
| HL_8URH_003 | No text annotation | ||
| HL_8URH_004 | No text annotation | ||
| HL_8URH_005 | tRNA anticodon loop | ||
| HL_8URH_006 | No text annotation | ||
| HL_8URH_007 | No text annotation | ||
| HL_8URH_008 | No text annotation | ||
| HL_8URH_009 | GNRA | ||
| HL_8URH_010 | GNRA | ||
| HL_8URH_110 | No text annotation | ||
| HL_8URH_011 | UNCG | ||
| HL_8URH_012 | GNRA related | ||
| HL_8URH_013 | GNRA | ||
| HL_8URH_014 | No text annotation | ||
| HL_8URH_015 | UNCG | ||
| HL_8URH_016 | GNRA | ||
| HL_8URH_017 | UNCG | ||
| HL_8URH_018 | GNRA wlth extra near cWW | ||
| HL_8URH_019 | tRNA D-loop | ||
| HL_8URH_020 | GNRA-like with tWH | ||
| HL_8URH_021 | No text annotation | ||
| HL_8URH_022 | GNRA | ||
| HL_8URH_023 | No text annotation | ||
| HL_8URH_024 | No text annotation | ||
| HL_8URH_025 | GNRA | ||
| HL_8URH_026 | GNRA | ||
| HL_8URH_027 | No text annotation | ||
| HL_8URH_028 | GNRA | ||
| HL_8URH_029 | No text annotation | ||
| HL_8URH_030 | GNRA | ||
| HL_8URH_031 | T-loop related | ||
| HL_8URH_111 | No text annotation | ||
| HL_8URH_032 | No text annotation | ||
| HL_8URH_033 | GNRA | ||
| HL_8URH_034 | GNRA | ||
| HL_8URH_035 | T-loop with 3 stacked bulged bases | ||
| HL_8URH_036 | No text annotation | ||
| HL_8URH_037 | UNCG | ||
| HL_8URH_038 | GNRA | ||
| HL_8URH_039 | No text annotation | ||
| HL_8URH_040 | No text annotation | ||
| HL_8URH_041 | No text annotation | ||
| HL_8URH_042 | UNCG | ||
| HL_8URH_043 | No text annotation | ||
| HL_8URH_044 | No text annotation | ||
| HL_8URH_045 | No text annotation | ||
| HL_8URH_046 | No text annotation | ||
| HL_8URH_047 | T-loop with 2 stacked bulged bases | ||
| HL_8URH_048 | No text annotation | ||
| HL_8URH_049 | T-loop with unstacked turn | ||
| HL_8URH_050 | No text annotation | ||
| HL_8URH_051 | Pseudoknot geometry | ||
| HL_8URH_052 | GNRA | ||
| HL_8URH_053 | GNRA | ||
| HL_8URH_054 | No text annotation | ||
| HL_8URH_055 | T-loop with 2 stacked bulged bases | ||
| HL_8URH_056 | No text annotation | ||
| HL_8URH_057 | GNRA | ||
| HL_8URH_058 | No text annotation | ||
| HL_8URH_059 | GNRA wlth tandem sheared | ||
| HL_8URH_060 | No text annotation | ||
| HL_8URH_061 | No text annotation | ||
| HL_8URH_062 | No text annotation | ||
| HL_8URH_112 | No text annotation | ||
| HL_8URH_063 | No text annotation | ||
| HL_8URH_064 | No text annotation | ||
| HL_8URH_065 | No text annotation | ||
| HL_8URH_066 | No text annotation | ||
| HL_8URH_067 | GNRA wlth tandem sheared | ||
| HL_8URH_068 | No text annotation | ||
| HL_8URH_069 | GNRA | ||
| HL_8URH_070 | T-loop with 2 stacked bulged bases | ||
| HL_8URH_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8URH_072 | GNRA | ||
| HL_8URH_073 | No text annotation | ||
| HL_8URH_074 | Mini UNCG with extended bulge | ||
| HL_8URH_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8URH_076 | UNCG | ||
| HL_8URH_077 | Mini UNCG | ||
| HL_8URH_078 | No text annotation | ||
| HL_8URH_079 | GNRA | ||
| HL_8URH_080 | UNCG | ||
| HL_8URH_113 | No text annotation | ||
| HL_8URH_081 | No text annotation | ||
| HL_8URH_082 | No text annotation | ||
| HL_8URH_083 | No text annotation | ||
| HL_8URH_084 | GNRA related | ||
| HL_8URH_085 | GNRA variation | ||
| HL_8URH_086 | No text annotation | ||
| HL_8URH_087 | No text annotation | ||
| HL_8URH_088 | No text annotation | ||
| HL_8URH_089 | No text annotation | ||
| HL_8URH_090 | No text annotation | ||
| HL_8URH_091 | No text annotation | ||
| HL_8URH_092 | No text annotation | ||
| HL_8URH_093 | No text annotation | ||
| HL_8URH_116 | No text annotation | ||
| HL_8URH_094 | Pseudoknot geometry | ||
| HL_8URH_095 | GNRA | ||
| HL_8URH_096 | GNRA | ||
| HL_8URH_097 | No text annotation | ||
| HL_8URH_098 | No text annotation | ||
| HL_8URH_099 | GNRA variation | ||
| HL_8URH_100 | No text annotation | ||
| HL_8URH_101 | GNRA | ||
| HL_8URH_102 | GNRA | ||
| HL_8URH_103 | Ribsomal LSU H95 | ||
| HL_8URH_104 | No text annotation | ||
| HL_8URH_105 | No text annotation | ||
| HL_8URH_114 | UNCG variation | ||
| HL_8URH_106 | No text annotation | ||
| HL_8URH_107 | GNRA | ||
| HL_8URH_115 | No text annotation | ||
| HL_8URH_108 | No text annotation | ||
| HL_8URH_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8URH_193 | No text annotation | ||
| IL_8URH_194 | No text annotation | ||
| IL_8URH_195 | No text annotation | ||
| IL_8URH_196 | No text annotation | ||
| IL_8URH_197 | No text annotation | ||
| IL_8URH_198 | No text annotation | ||
| IL_8URH_001 | Single bulged G | ||
| IL_8URH_002 | Single bulged A | ||
| IL_8URH_003 | No text annotation | ||
| IL_8URH_004 | Minor groove platform | ||
| IL_8URH_005 | Multiple bulged bases | ||
| IL_8URH_006 | Minor groove platform with extra cWW | ||
| IL_8URH_007 | Minor groove platform | ||
| IL_8URH_199 | Single bulged G | ||
| IL_8URH_008 | Single bulged G, near cWW | ||
| IL_8URH_009 | Isolated non-canonical cWW pair | ||
| IL_8URH_010 | Minor groove platform related | ||
| IL_8URH_011 | Isolated cWH basepair | ||
| IL_8URH_200 | No text annotation | ||
| IL_8URH_012 | tWH-tWH-tHW-tHW | ||
| IL_8URH_013 | No text annotation | ||
| IL_8URH_014 | Kink-turn with non-sequential stacking | ||
| IL_8URH_015 | No text annotation | ||
| IL_8URH_016 | C-loop | ||
| IL_8URH_017 | Single bulged U | ||
| IL_8URH_018 | C-loop | ||
| IL_8URH_019 | Single bulged G | ||
| IL_8URH_020 | No text annotation | ||
| IL_8URH_021 | No text annotation | ||
| IL_8URH_022 | tSH-tHW-tWW | ||
| IL_8URH_023 | No text annotation | ||
| IL_8URH_024 | SSU/LSU pseudoknot | ||
| IL_8URH_025 | Kink-turn related | ||
| IL_8URH_026 | No text annotation | ||
| IL_8URH_027 | tSH-tHW-tHS | ||
| IL_8URH_028 | Major groove platform | ||
| IL_8URH_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8URH_030 | No text annotation | ||
| IL_8URH_031 | Major groove platform; stack outside cWW | ||
| IL_8URH_032 | Single stack bend | ||
| IL_8URH_033 | Tandem non-canonical cWW pairs | ||
| IL_8URH_201 | Triple non-canonical cWW pairs | ||
| IL_8URH_034 | No text annotation | ||
| IL_8URH_035 | Kink-turn | ||
| IL_8URH_036 | Left turn | ||
| IL_8URH_037 | tSH-tHW-tHS | ||
| IL_8URH_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8URH_039 | Single bulged A | ||
| IL_8URH_040 | Single bulged G | ||
| IL_8URH_041 | Minor groove platform | ||
| IL_8URH_042 | No text annotation | ||
| IL_8URH_043 | Minor groove platform | ||
| IL_8URH_208 | Single stack bend | ||
| IL_8URH_044 | No text annotation | ||
| IL_8URH_202 | No text annotation | ||
| IL_8URH_045 | Tandem non-canonical cWW pairs | ||
| IL_8URH_046 | Single bulged U | ||
| IL_8URH_047 | Stack and bulge | ||
| IL_8URH_048 | Isolated cWS basepair | ||
| IL_8URH_049 | Minor groove platform | ||
| IL_8URH_050 | Single bulged A | ||
| IL_8URH_051 | Isolated non-canonical cWW pair | ||
| IL_8URH_052 | No text annotation | ||
| IL_8URH_053 | Minor groove platform | ||
| IL_8URH_054 | No text annotation | ||
| IL_8URH_055 | No text annotation | ||
| IL_8URH_056 | 180 degree turn | ||
| IL_8URH_057 | Double sheared with non-canonical cWW | ||
| IL_8URH_058 | No text annotation | ||
| IL_8URH_059 | No text annotation | ||
| IL_8URH_060 | No text annotation | ||
| IL_8URH_061 | Partly complementary | ||
| IL_8URH_062 | Isolated non-canonical cWW pair | ||
| IL_8URH_063 | Double sheared | ||
| IL_8URH_064 | Triple sheared related | ||
| IL_8URH_065 | Single bulged A | ||
| IL_8URH_066 | No text annotation | ||
| IL_8URH_067 | Triple sheared with non-canonical cWW | ||
| IL_8URH_068 | Single bulged A | ||
| IL_8URH_069 | Minor groove platform | ||
| IL_8URH_070 | No text annotation | ||
| IL_8URH_071 | Single stack bend | ||
| IL_8URH_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URH_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8URH_074 | No text annotation | ||
| IL_8URH_075 | No text annotation | ||
| IL_8URH_076 | No text annotation | ||
| IL_8URH_077 | No text annotation | ||
| IL_8URH_078 | Double sheared | ||
| IL_8URH_079 | Isolated non-canonical cWW pair | ||
| IL_8URH_080 | AAA cross-strand stack | ||
| IL_8URH_081 | No text annotation | ||
| IL_8URH_082 | tHW-tHW cross-strand stack | ||
| IL_8URH_083 | Single bulged A | ||
| IL_8URH_084 | Single bulged G | ||
| IL_8URH_085 | Triple sheared | ||
| IL_8URH_086 | Major groove platform | ||
| IL_8URH_087 | Multiple bulged bases | ||
| IL_8URH_088 | Single stack bend | ||
| IL_8URH_089 | 90 degree turn | ||
| IL_8URH_203 | No text annotation | ||
| IL_8URH_090 | Stack outside cWW | ||
| IL_8URH_091 | Single stack bend | ||
| IL_8URH_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8URH_093 | Single bulged G | ||
| IL_8URH_094 | C-loop with bulged stacked A's | ||
| IL_8URH_095 | Isolated non-canonical cWW pair | ||
| IL_8URH_096 | Double sheared with non-canonical cWW | ||
| IL_8URH_204 | No text annotation | ||
| IL_8URH_209 | Single bulged A | ||
| IL_8URH_097 | Tandem non-canonical cWW pairs | ||
| IL_8URH_098 | Single stack bend | ||
| IL_8URH_099 | Single bulged C | ||
| IL_8URH_100 | UAA/GAN | ||
| IL_8URH_101 | SSU/LSU pseudoknot | ||
| IL_8URH_102 | Single bulged U | ||
| IL_8URH_103 | Kink-turn related | ||
| IL_8URH_104 | No text annotation | ||
| IL_8URH_105 | Isolated non-canonical cWW pair | ||
| IL_8URH_106 | Tandem non-canonical cWW pairs | ||
| IL_8URH_210 | No text annotation | ||
| IL_8URH_107 | No text annotation | ||
| IL_8URH_108 | No text annotation | ||
| IL_8URH_109 | No text annotation | ||
| IL_8URH_110 | Tandem non-canonical cWW pairs | ||
| IL_8URH_111 | Isolated cWS basepair | ||
| IL_8URH_112 | No text annotation | ||
| IL_8URH_113 | Kink-turn | ||
| IL_8URH_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URH_115 | Major groove platform; stack outside cWW | ||
| IL_8URH_116 | C-loop | ||
| IL_8URH_117 | UAA/GAN | ||
| IL_8URH_118 | tSH-tHW-tHS | ||
| IL_8URH_119 | No text annotation | ||
| IL_8URH_120 | Single stack bend | ||
| IL_8URH_121 | Single stack bend | ||
| IL_8URH_205 | No text annotation | ||
| IL_8URH_122 | No text annotation | ||
| IL_8URH_123 | UAA/GAN | ||
| IL_8URH_124 | Tandem non-canonical cWW pairs | ||
| IL_8URH_125 | tSH-tHW | ||
| IL_8URH_126 | Single bulged U | ||
| IL_8URH_127 | No text annotation | ||
| IL_8URH_128 | tSH-tHW-tHS | ||
| IL_8URH_129 | 180 degree turn | ||
| IL_8URH_130 | Single bulged A | ||
| IL_8URH_131 | UAA/GAN variation | ||
| IL_8URH_132 | No text annotation | ||
| IL_8URH_133 | Isolated tWW turn | ||
| IL_8URH_134 | Major groove platform; stack outside cWW | ||
| IL_8URH_206 | No text annotation | ||
| IL_8URH_135 | Intercalated tWH | ||
| IL_8URH_136 | tSH-tSH-tHH-tHS | ||
| IL_8URH_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8URH_138 | Triple sheared | ||
| IL_8URH_139 | Single bulged C | ||
| IL_8URH_140 | Single bulged A | ||
| IL_8URH_141 | Kink-turn related | ||
| IL_8URH_142 | Minor groove platform, major groove intercalation | ||
| IL_8URH_143 | Major groove intercalation | ||
| IL_8URH_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8URH_207 | No text annotation | ||
| IL_8URH_145 | UAA/GAN related | ||
| IL_8URH_146 | Intercalated cWW | ||
| IL_8URH_147 | Bulged stacked bases | ||
| IL_8URH_148 | No text annotation | ||
| IL_8URH_149 | Major groove platform | ||
| IL_8URH_150 | No text annotation | ||
| IL_8URH_151 | No text annotation | ||
| IL_8URH_152 | No text annotation | ||
| IL_8URH_153 | Minor groove platform | ||
| IL_8URH_154 | Isolated tHS basepair with bulges | ||
| IL_8URH_155 | Isolated non-canonical cWW pair | ||
| IL_8URH_156 | Tandem non-canonical cWW pairs | ||
| IL_8URH_157 | Isolated cWH basepair | ||
| IL_8URH_158 | Isolated non-canonical cWW pair | ||
| IL_8URH_159 | Tandem non-canonical cWW pairs | ||
| IL_8URH_160 | Isolated non-canonical cWW pair | ||
| IL_8URH_161 | Isolated non-canonical cWW pair | ||
| IL_8URH_162 | No text annotation | ||
| IL_8URH_163 | Isolated non-canonical cWW pair | ||
| IL_8URH_164 | Kink-turn | ||
| IL_8URH_165 | Single bulged U | ||
| IL_8URH_166 | Double sheared | ||
| IL_8URH_167 | No text annotation | ||
| IL_8URH_168 | No text annotation | ||
| IL_8URH_169 | No text annotation | ||
| IL_8URH_170 | Major groove minor groove platform with extra cWW | ||
| IL_8URH_171 | Double sheared with non-canonical cWW | ||
| IL_8URH_172 | No text annotation | ||
| IL_8URH_173 | Isolated non-canonical cWW with bulges | ||
| IL_8URH_174 | No text annotation | ||
| IL_8URH_175 | Major groove platform with intercalation | ||
| IL_8URH_176 | No text annotation | ||
| IL_8URH_177 | Single bulged A | ||
| IL_8URH_178 | tSH-tHS-tHW | ||
| IL_8URH_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8URH_180 | C-loop | ||
| IL_8URH_181 | UAA/GAN related, with intercalation | ||
| IL_8URH_182 | Multiple bulged bases | ||
| IL_8URH_183 | UAA/GAN with extra cWW | ||
| IL_8URH_184 | No text annotation | ||
| IL_8URH_185 | Major groove intercalation | ||
| IL_8URH_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8URH_187 | tHS double platform | ||
| IL_8URH_188 | Major groove intercalation | ||
| IL_8URH_189 | No text annotation | ||
| IL_8URH_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8URH_191 | Symmetric double minor groove platform | ||
| IL_8URH_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8URH_020 | No text annotation | ||
| J3_8URH_021 | No text annotation | ||
| J3_8URH_022 | No text annotation | ||
| J3_8URH_023 | No text annotation | ||
| J3_8URH_024 | No text annotation | ||
| J3_8URH_001 | No text annotation | ||
| J3_8URH_002 | No text annotation | ||
| J3_8URH_003 | No text annotation | ||
| J3_8URH_025 | No text annotation | ||
| J3_8URH_004 | No text annotation | ||
| J3_8URH_005 | No text annotation | ||
| J3_8URH_026 | No text annotation | ||
| J3_8URH_006 | No text annotation | ||
| J3_8URH_007 | No text annotation | ||
| J3_8URH_027 | No text annotation | ||
| J3_8URH_008 | No text annotation | ||
| J3_8URH_028 | No text annotation | ||
| J3_8URH_009 | No text annotation | ||
| J3_8URH_029 | No text annotation | ||
| J3_8URH_030 | No text annotation | ||
| J3_8URH_031 | No text annotation | ||
| J3_8URH_032 | No text annotation | ||
| J3_8URH_033 | No text annotation | ||
| J3_8URH_010 | No text annotation | ||
| J3_8URH_011 | No text annotation | ||
| J3_8URH_012 | No text annotation | ||
| J3_8URH_013 | No text annotation | ||
| J3_8URH_014 | No text annotation | ||
| J3_8URH_034 | No text annotation | ||
| J3_8URH_035 | No text annotation | ||
| J3_8URH_015 | Kink-turn 3-way junction | ||
| J3_8URH_036 | No text annotation | ||
| J3_8URH_016 | No text annotation | ||
| J3_8URH_017 | No text annotation | ||
| J3_8URH_037 | No text annotation | ||
| J3_8URH_018 | No text annotation | ||
| J3_8URH_019 | No text annotation | ||
| J4_8URH_001 | tRNA junction | ||
| J4_8URH_002 | tRNA junction | ||
| J4_8URH_003 | No text annotation | ||
| J4_8URH_004 | No text annotation | ||
| J4_8URH_005 | No text annotation | ||
| J4_8URH_006 | No text annotation | ||
| J4_8URH_007 | No text annotation | ||
| J4_8URH_008 | No text annotation | ||
| J4_8URH_009 | No text annotation | ||
| J4_8URH_010 | No text annotation | ||
| J4_8URH_011 | No text annotation | ||
| J4_8URH_012 | No text annotation | ||
| J4_8URH_013 | No text annotation | ||
| J4_8URH_014 | No text annotation | ||
| J4_8URH_015 | No text annotation | ||
| J5_8URH_001 | No text annotation | ||
| J5_8URH_002 | No text annotation | ||
| J5_8URH_003 | No text annotation | ||
| J5_8URH_004 | No text annotation | ||
| J5_8URH_005 | No text annotation | ||
| J5_8URH_006 | No text annotation | ||
| J5_8URH_007 | No text annotation | ||
| J6_8URH_001 | No text annotation | ||
| J7_8URH_001 | No text annotation | ||
| J7_8URH_002 | No text annotation |
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