HL_8URH_073

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8URH|1|a|U|1396, 8URH|1|a|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URH_073 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.09

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8URH|1|a|G|1389
8URH|1|a|U|1390
8URH|1|a|U|1391
8URH|1|a|A|1392
8URH|1|a|A|1393
8URH|1|a|U|1394
8URH|1|a|A|1395
8URH|1|a|U|1396
8URH|1|a|U|1397
8URH|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23