HL_8URI_007
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8URI_007 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0938
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8URI|1|D|U|12
8URI|1|D|U|13
8URI|1|D|U|14
8URI|1|D|G|15
8URI|1|D|A|16
8URI|1|D|U|17
8URI|1|D|C|18
8URI|1|D|A|19
8URI|1|D|U|20
8URI|1|D|G|21
8URI|1|D|G|22
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 27 nt long spacer
- Chain K
- 30S ribosomal protein S5
- Chain R
- 30S ribosomal protein S12
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