8URI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8URI_001 | No text annotation | ||
| HL_8URI_002 | tRNA anticodon loop | ||
| HL_8URI_003 | No text annotation | ||
| HL_8URI_004 | No text annotation | ||
| HL_8URI_005 | tRNA anticodon loop | ||
| HL_8URI_006 | No text annotation | ||
| HL_8URI_007 | No text annotation | ||
| HL_8URI_008 | No text annotation | ||
| HL_8URI_009 | GNRA | ||
| HL_8URI_010 | GNRA | ||
| HL_8URI_110 | No text annotation | ||
| HL_8URI_011 | UNCG | ||
| HL_8URI_012 | GNRA related | ||
| HL_8URI_013 | GNRA | ||
| HL_8URI_014 | No text annotation | ||
| HL_8URI_015 | UNCG | ||
| HL_8URI_016 | GNRA | ||
| HL_8URI_017 | UNCG | ||
| HL_8URI_018 | GNRA wlth extra near cWW | ||
| HL_8URI_019 | tRNA D-loop | ||
| HL_8URI_020 | GNRA-like with tWH | ||
| HL_8URI_021 | No text annotation | ||
| HL_8URI_022 | GNRA | ||
| HL_8URI_023 | No text annotation | ||
| HL_8URI_024 | No text annotation | ||
| HL_8URI_025 | GNRA | ||
| HL_8URI_026 | GNRA | ||
| HL_8URI_027 | No text annotation | ||
| HL_8URI_028 | GNRA | ||
| HL_8URI_029 | No text annotation | ||
| HL_8URI_030 | GNRA | ||
| HL_8URI_031 | T-loop related | ||
| HL_8URI_111 | No text annotation | ||
| HL_8URI_032 | No text annotation | ||
| HL_8URI_033 | GNRA | ||
| HL_8URI_034 | GNRA | ||
| HL_8URI_035 | T-loop with 3 stacked bulged bases | ||
| HL_8URI_036 | No text annotation | ||
| HL_8URI_037 | UNCG | ||
| HL_8URI_038 | GNRA | ||
| HL_8URI_039 | No text annotation | ||
| HL_8URI_040 | No text annotation | ||
| HL_8URI_041 | No text annotation | ||
| HL_8URI_042 | UNCG | ||
| HL_8URI_043 | No text annotation | ||
| HL_8URI_044 | No text annotation | ||
| HL_8URI_045 | No text annotation | ||
| HL_8URI_046 | No text annotation | ||
| HL_8URI_047 | T-loop with 2 stacked bulged bases | ||
| HL_8URI_048 | No text annotation | ||
| HL_8URI_049 | T-loop with unstacked turn | ||
| HL_8URI_050 | No text annotation | ||
| HL_8URI_051 | Pseudoknot geometry | ||
| HL_8URI_052 | GNRA | ||
| HL_8URI_053 | GNRA | ||
| HL_8URI_054 | No text annotation | ||
| HL_8URI_055 | T-loop with 2 stacked bulged bases | ||
| HL_8URI_056 | No text annotation | ||
| HL_8URI_057 | GNRA | ||
| HL_8URI_058 | No text annotation | ||
| HL_8URI_059 | GNRA wlth tandem sheared | ||
| HL_8URI_060 | No text annotation | ||
| HL_8URI_061 | No text annotation | ||
| HL_8URI_062 | No text annotation | ||
| HL_8URI_112 | No text annotation | ||
| HL_8URI_063 | No text annotation | ||
| HL_8URI_064 | No text annotation | ||
| HL_8URI_065 | No text annotation | ||
| HL_8URI_066 | No text annotation | ||
| HL_8URI_067 | GNRA wlth tandem sheared | ||
| HL_8URI_068 | No text annotation | ||
| HL_8URI_069 | GNRA | ||
| HL_8URI_070 | T-loop with 2 stacked bulged bases | ||
| HL_8URI_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8URI_072 | GNRA | ||
| HL_8URI_073 | No text annotation | ||
| HL_8URI_074 | Mini UNCG with extended bulge | ||
| HL_8URI_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8URI_076 | UNCG | ||
| HL_8URI_077 | Mini UNCG | ||
| HL_8URI_078 | No text annotation | ||
| HL_8URI_079 | GNRA | ||
| HL_8URI_080 | UNCG | ||
| HL_8URI_113 | No text annotation | ||
| HL_8URI_081 | No text annotation | ||
| HL_8URI_082 | No text annotation | ||
| HL_8URI_083 | No text annotation | ||
| HL_8URI_084 | GNRA related | ||
| HL_8URI_085 | GNRA variation | ||
| HL_8URI_086 | No text annotation | ||
| HL_8URI_087 | No text annotation | ||
| HL_8URI_088 | No text annotation | ||
| HL_8URI_089 | No text annotation | ||
| HL_8URI_090 | No text annotation | ||
| HL_8URI_091 | No text annotation | ||
| HL_8URI_092 | No text annotation | ||
| HL_8URI_093 | No text annotation | ||
| HL_8URI_116 | No text annotation | ||
| HL_8URI_094 | Pseudoknot geometry | ||
| HL_8URI_095 | GNRA | ||
| HL_8URI_096 | GNRA | ||
| HL_8URI_097 | No text annotation | ||
| HL_8URI_098 | No text annotation | ||
| HL_8URI_099 | GNRA variation | ||
| HL_8URI_100 | No text annotation | ||
| HL_8URI_101 | GNRA | ||
| HL_8URI_102 | GNRA | ||
| HL_8URI_103 | Ribsomal LSU H95 | ||
| HL_8URI_104 | No text annotation | ||
| HL_8URI_105 | No text annotation | ||
| HL_8URI_114 | UNCG variation | ||
| HL_8URI_106 | No text annotation | ||
| HL_8URI_107 | GNRA | ||
| HL_8URI_115 | No text annotation | ||
| HL_8URI_108 | No text annotation | ||
| HL_8URI_109 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8URI_150 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | homologous IL_5J7L_321 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8URI_193 | No text annotation | ||
| IL_8URI_194 | No text annotation | ||
| IL_8URI_195 | No text annotation | ||
| IL_8URI_196 | No text annotation | ||
| IL_8URI_197 | No text annotation | ||
| IL_8URI_198 | No text annotation | ||
| IL_8URI_001 | Single bulged G | ||
| IL_8URI_002 | Single bulged A | ||
| IL_8URI_003 | No text annotation | ||
| IL_8URI_004 | Minor groove platform | ||
| IL_8URI_005 | Multiple bulged bases | ||
| IL_8URI_006 | Minor groove platform with extra cWW | ||
| IL_8URI_007 | Minor groove platform | ||
| IL_8URI_199 | Single bulged G | ||
| IL_8URI_008 | Single bulged G, near cWW | ||
| IL_8URI_009 | Isolated non-canonical cWW pair | ||
| IL_8URI_010 | Minor groove platform related | ||
| IL_8URI_011 | Isolated cWH basepair | ||
| IL_8URI_200 | No text annotation | ||
| IL_8URI_012 | tWH-tWH-tHW-tHW | ||
| IL_8URI_013 | No text annotation | ||
| IL_8URI_014 | Kink-turn with non-sequential stacking | ||
| IL_8URI_015 | No text annotation | ||
| IL_8URI_016 | C-loop | ||
| IL_8URI_017 | Single bulged U | ||
| IL_8URI_018 | C-loop | ||
| IL_8URI_019 | Single bulged G | ||
| IL_8URI_020 | No text annotation | ||
| IL_8URI_021 | No text annotation | ||
| IL_8URI_022 | tSH-tHW-tWW | ||
| IL_8URI_023 | No text annotation | ||
| IL_8URI_024 | SSU/LSU pseudoknot | ||
| IL_8URI_025 | Kink-turn related | ||
| IL_8URI_026 | No text annotation | ||
| IL_8URI_027 | tSH-tHW-tHS | ||
| IL_8URI_028 | Major groove platform | ||
| IL_8URI_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8URI_030 | No text annotation | ||
| IL_8URI_031 | Major groove platform; stack outside cWW | ||
| IL_8URI_032 | Single stack bend | ||
| IL_8URI_033 | Tandem non-canonical cWW pairs | ||
| IL_8URI_201 | Triple non-canonical cWW pairs | ||
| IL_8URI_034 | No text annotation | ||
| IL_8URI_035 | Kink-turn | ||
| IL_8URI_036 | Left turn | ||
| IL_8URI_037 | tSH-tHW-tHS | ||
| IL_8URI_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8URI_039 | Single bulged A | ||
| IL_8URI_040 | Single bulged G | ||
| IL_8URI_041 | Minor groove platform | ||
| IL_8URI_042 | No text annotation | ||
| IL_8URI_043 | Minor groove platform | ||
| IL_8URI_208 | Single stack bend | ||
| IL_8URI_044 | No text annotation | ||
| IL_8URI_202 | No text annotation | ||
| IL_8URI_045 | Tandem non-canonical cWW pairs | ||
| IL_8URI_046 | Single bulged U | ||
| IL_8URI_047 | No text annotation | ||
| IL_8URI_048 | Isolated cWS basepair | ||
| IL_8URI_049 | Minor groove platform | ||
| IL_8URI_050 | Single bulged A | ||
| IL_8URI_051 | Isolated non-canonical cWW pair | ||
| IL_8URI_052 | No text annotation | ||
| IL_8URI_053 | Minor groove platform | ||
| IL_8URI_054 | No text annotation | ||
| IL_8URI_055 | No text annotation | ||
| IL_8URI_056 | 180 degree turn | ||
| IL_8URI_057 | Double sheared with non-canonical cWW | ||
| IL_8URI_058 | No text annotation | ||
| IL_8URI_059 | No text annotation | ||
| IL_8URI_060 | No text annotation | ||
| IL_8URI_061 | Partly complementary | ||
| IL_8URI_062 | Isolated non-canonical cWW pair | ||
| IL_8URI_063 | Double sheared | ||
| IL_8URI_064 | Triple sheared related | ||
| IL_8URI_065 | Single bulged A | ||
| IL_8URI_066 | No text annotation | ||
| IL_8URI_067 | Triple sheared with non-canonical cWW | ||
| IL_8URI_068 | Single bulged A | ||
| IL_8URI_069 | Minor groove platform | ||
| IL_8URI_070 | No text annotation | ||
| IL_8URI_071 | Single stack bend | ||
| IL_8URI_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URI_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8URI_074 | No text annotation | ||
| IL_8URI_075 | No text annotation | ||
| IL_8URI_076 | No text annotation | ||
| IL_8URI_077 | No text annotation | ||
| IL_8URI_078 | Double sheared | ||
| IL_8URI_079 | Isolated non-canonical cWW pair | ||
| IL_8URI_080 | AAA cross-strand stack | ||
| IL_8URI_081 | No text annotation | ||
| IL_8URI_082 | tHW-tHW cross-strand stack | ||
| IL_8URI_083 | Single bulged A | ||
| IL_8URI_084 | Single bulged G | ||
| IL_8URI_085 | Triple sheared | ||
| IL_8URI_086 | Major groove platform | ||
| IL_8URI_087 | Multiple bulged bases | ||
| IL_8URI_088 | Single stack bend | ||
| IL_8URI_089 | 90 degree turn | ||
| IL_8URI_203 | No text annotation | ||
| IL_8URI_090 | Stack outside cWW | ||
| IL_8URI_091 | Single stack bend | ||
| IL_8URI_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8URI_093 | Single bulged G | ||
| IL_8URI_094 | C-loop with bulged stacked A's | ||
| IL_8URI_095 | Isolated non-canonical cWW pair | ||
| IL_8URI_096 | Double sheared with non-canonical cWW | ||
| IL_8URI_204 | No text annotation | ||
| IL_8URI_209 | Single bulged A | ||
| IL_8URI_097 | Tandem non-canonical cWW pairs | ||
| IL_8URI_098 | Single stack bend | ||
| IL_8URI_099 | Single bulged C | ||
| IL_8URI_100 | UAA/GAN | ||
| IL_8URI_101 | SSU/LSU pseudoknot | ||
| IL_8URI_102 | Single bulged U | ||
| IL_8URI_103 | Kink-turn related | ||
| IL_8URI_104 | No text annotation | ||
| IL_8URI_105 | Isolated non-canonical cWW pair | ||
| IL_8URI_106 | Tandem non-canonical cWW pairs | ||
| IL_8URI_210 | No text annotation | ||
| IL_8URI_107 | No text annotation | ||
| IL_8URI_108 | No text annotation | ||
| IL_8URI_109 | Major groove platform | ||
| IL_8URI_110 | Tandem non-canonical cWW pairs | ||
| IL_8URI_111 | Isolated cWS basepair | ||
| IL_8URI_112 | No text annotation | ||
| IL_8URI_113 | Kink-turn | ||
| IL_8URI_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URI_115 | Major groove platform; stack outside cWW | ||
| IL_8URI_116 | C-loop | ||
| IL_8URI_117 | UAA/GAN | ||
| IL_8URI_118 | tSH-tHW-tHS | ||
| IL_8URI_119 | No text annotation | ||
| IL_8URI_120 | Single stack bend | ||
| IL_8URI_121 | Single stack bend | ||
| IL_8URI_205 | No text annotation | ||
| IL_8URI_122 | No text annotation | ||
| IL_8URI_123 | UAA/GAN | ||
| IL_8URI_124 | Tandem non-canonical cWW pairs | ||
| IL_8URI_125 | tSH-tHW | ||
| IL_8URI_126 | Single bulged U | ||
| IL_8URI_127 | No text annotation | ||
| IL_8URI_128 | tSH-tHW-tHS | ||
| IL_8URI_129 | 180 degree turn | ||
| IL_8URI_130 | Single bulged A | ||
| IL_8URI_131 | UAA/GAN variation | ||
| IL_8URI_132 | No text annotation | ||
| IL_8URI_133 | Isolated tWW turn | ||
| IL_8URI_134 | Major groove platform; stack outside cWW | ||
| IL_8URI_206 | No text annotation | ||
| IL_8URI_135 | Intercalated tWH | ||
| IL_8URI_136 | tSH-tSH-tHH-tHS | ||
| IL_8URI_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8URI_138 | Triple sheared | ||
| IL_8URI_139 | Single bulged C | ||
| IL_8URI_140 | Single bulged A | ||
| IL_8URI_141 | Kink-turn related | ||
| IL_8URI_142 | Minor groove platform, major groove intercalation | ||
| IL_8URI_143 | Major groove intercalation | ||
| IL_8URI_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8URI_207 | No text annotation | ||
| IL_8URI_145 | UAA/GAN related | ||
| IL_8URI_146 | Intercalated cWW | ||
| IL_8URI_147 | Bulged stacked bases | ||
| IL_8URI_148 | No text annotation | ||
| IL_8URI_149 | Major groove platform | ||
| IL_8URI_151 | No text annotation | ||
| IL_8URI_152 | Decoding loop related | ||
| IL_8URI_153 | Minor groove platform | ||
| IL_8URI_154 | Isolated tHS basepair with bulges | ||
| IL_8URI_155 | Isolated non-canonical cWW pair | ||
| IL_8URI_156 | Tandem non-canonical cWW pairs | ||
| IL_8URI_157 | Isolated cWH basepair | ||
| IL_8URI_158 | Isolated non-canonical cWW pair | ||
| IL_8URI_159 | Tandem non-canonical cWW pairs | ||
| IL_8URI_160 | Isolated non-canonical cWW pair | ||
| IL_8URI_161 | Isolated non-canonical cWW pair | ||
| IL_8URI_162 | No text annotation | ||
| IL_8URI_163 | Isolated non-canonical cWW pair | ||
| IL_8URI_164 | Kink-turn | ||
| IL_8URI_165 | Single bulged U | ||
| IL_8URI_166 | Double sheared | ||
| IL_8URI_167 | No text annotation | ||
| IL_8URI_168 | No text annotation | ||
| IL_8URI_169 | No text annotation | ||
| IL_8URI_170 | Major groove minor groove platform with extra cWW | ||
| IL_8URI_171 | Double sheared with non-canonical cWW | ||
| IL_8URI_172 | No text annotation | ||
| IL_8URI_173 | Isolated non-canonical cWW with bulges | ||
| IL_8URI_174 | No text annotation | ||
| IL_8URI_175 | Major groove platform with intercalation | ||
| IL_8URI_176 | No text annotation | ||
| IL_8URI_177 | Single bulged A | ||
| IL_8URI_178 | tSH-tHS-tHW | ||
| IL_8URI_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8URI_180 | C-loop | ||
| IL_8URI_181 | UAA/GAN related, with intercalation | ||
| IL_8URI_182 | Multiple bulged bases | ||
| IL_8URI_183 | UAA/GAN with extra cWW | ||
| IL_8URI_184 | No text annotation | ||
| IL_8URI_185 | Major groove intercalation | ||
| IL_8URI_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8URI_187 | tHS double platform | ||
| IL_8URI_188 | Major groove intercalation | ||
| IL_8URI_189 | No text annotation | ||
| IL_8URI_190 | Major groove minor groove platform; mini C-loop | ||
| IL_8URI_191 | Symmetric double minor groove platform | ||
| IL_8URI_192 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8URI_020 | No text annotation | ||
| J3_8URI_021 | No text annotation | ||
| J3_8URI_022 | No text annotation | ||
| J3_8URI_023 | No text annotation | ||
| J3_8URI_024 | No text annotation | ||
| J3_8URI_001 | No text annotation | ||
| J3_8URI_002 | No text annotation | ||
| J3_8URI_003 | No text annotation | ||
| J3_8URI_025 | No text annotation | ||
| J3_8URI_004 | No text annotation | ||
| J3_8URI_005 | No text annotation | ||
| J3_8URI_026 | No text annotation | ||
| J3_8URI_006 | No text annotation | ||
| J3_8URI_007 | No text annotation | ||
| J3_8URI_027 | No text annotation | ||
| J3_8URI_008 | No text annotation | ||
| J3_8URI_028 | No text annotation | ||
| J3_8URI_009 | No text annotation | ||
| J3_8URI_029 | No text annotation | ||
| J3_8URI_030 | No text annotation | ||
| J3_8URI_031 | No text annotation | ||
| J3_8URI_032 | No text annotation | ||
| J3_8URI_033 | No text annotation | ||
| J3_8URI_010 | No text annotation | ||
| J3_8URI_011 | No text annotation | ||
| J3_8URI_012 | No text annotation | ||
| J3_8URI_013 | No text annotation | ||
| J3_8URI_014 | No text annotation | ||
| J3_8URI_034 | No text annotation | ||
| J3_8URI_035 | No text annotation | ||
| J3_8URI_015 | Kink-turn 3-way junction | ||
| J3_8URI_036 | No text annotation | ||
| J3_8URI_016 | No text annotation | ||
| J3_8URI_017 | No text annotation | ||
| J3_8URI_037 | No text annotation | ||
| J3_8URI_018 | No text annotation | ||
| J3_8URI_019 | No text annotation | ||
| J4_8URI_001 | tRNA junction | ||
| J4_8URI_002 | tRNA junction | ||
| J4_8URI_003 | No text annotation | ||
| J4_8URI_004 | No text annotation | ||
| J4_8URI_005 | No text annotation | ||
| J4_8URI_006 | No text annotation | ||
| J4_8URI_007 | No text annotation | ||
| J4_8URI_008 | No text annotation | ||
| J4_8URI_009 | No text annotation | ||
| J4_8URI_010 | No text annotation | ||
| J4_8URI_011 | No text annotation | ||
| J4_8URI_012 | No text annotation | ||
| J4_8URI_013 | No text annotation | ||
| J4_8URI_014 | No text annotation | ||
| J4_8URI_015 | No text annotation | ||
| J5_8URI_001 | No text annotation | ||
| J5_8URI_002 | No text annotation | ||
| J5_8URI_003 | No text annotation | ||
| J5_8URI_004 | No text annotation | ||
| J5_8URI_005 | No text annotation | ||
| J5_8URI_006 | No text annotation | ||
| J5_8URI_007 | No text annotation | ||
| J6_8URI_001 | No text annotation | ||
| J7_8URI_001 | No text annotation | ||
| J7_8URI_002 | No text annotation |
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