HL_8URI_073

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8URI|1|a|U|1396, 8URI|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URI_073 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0901

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8URI|1|a|G|1389
8URI|1|a|U|1390
8URI|1|a|U|1391
8URI|1|a|A|1392
8URI|1|a|A|1393
8URI|1|a|U|1394
8URI|1|a|A|1395
8URI|1|a|U|1396
8URI|1|a|U|1397
8URI|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23