HL_8URI_115
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8URI|1|d|C|35, 8URI|1|d|C|36, 8URI|1|d|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8URI_115 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.114
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8URI|1|d|A|34
8URI|1|d|C|35
8URI|1|d|C|36
8URI|1|d|C|37
8URI|1|d|C|38
8URI|1|d|A|39
8URI|1|d|U|40
8URI|1|d|G|41
8URI|1|d|C|42
8URI|1|d|C|43
8URI|1|d|G|44
8URI|1|d|A|45
8URI|1|d|A|46
8URI|1|d|C|47
8URI|1|d|U|48
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 50S ribosomal protein L31
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
Coloring options: