HL_8URM_004

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8URM|1|1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URM_004 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.2162

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8URM|1|1|U|137
8URM|1|1|U|138
8URM|1|1|U|139
8URM|1|1|C|140
8URM|1|1|G|141
8URM|1|1|A|142

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23