3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8URM_019 not in the Motif Atlas
Geometric match to HL_5J7L_152
Geometric discrepancy: 0.0513
The information below is about HL_5J7L_152
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8URM|1|1|G|629
8URM|1|1|G|630
8URM|1|1|A|631
8URM|1|1|A|632
8URM|1|1|A|633
8URM|1|1|C|634

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15
Chain e
50S ribosomal protein L35

Coloring options:


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