HL_8URM_025

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URM_025 not in the Motif Atlas

Homologous match to HL_8B0X_056

Geometric discrepancy: 0.406

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8URM|1|1|C|885
8URM|1|1|A|886
8URM|1|1|A|887
8URM|1|1|C|888
8URM|1|1|C|889
8URM|1|1|C|890
8URM|1|1|G|891

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain x

Small ribosomal subunit protein uS19