HL_8URM_057

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URM_057 not in the Motif Atlas

Geometric match to HL_5J7L_190

Geometric discrepancy: 0.0912

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8URM|1|1|U|2356
8URM|1|1|G|2357
8URM|1|1|A|2358
8URM|1|1|C|2359
8URM|1|1|G|2360
8URM|1|1|G|2361

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain W

Large ribosomal subunit protein bL27

Chain e

50S ribosomal protein L35