HL_8URY_018

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8URY|1|D|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URY_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1318

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8URY|1|D|G|462
8URY|1|D|U|463
8URY|1|D|U|464
8URY|1|D|A|465
8URY|1|D|A|466
8URY|1|D|U|467
8URY|1|D|A|468
8URY|1|D|C|469
8URY|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains