8URY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8URY_012 | 1/D/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_8URY_014 | 1/D/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_8URY_016 | 1/D/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_8URY_017 | 1/D/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_8URY_018 | 1/D/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_8URY_020 | 1/D/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_8URY_021 | 1/D/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_8URY_022 | 1/D/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8URY_023 | 1/D/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_8URY_026 | 1/D/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_8URY_028 | 1/D/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_8URY_032 | 1/D/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_92935.1 | |
| HL_8URY_033 | 1/D/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_8URY_034 | 1/D/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_8URY_035 | 1/D/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8URY_036 | 1/D/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_8URY_037 | 1/D/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
| HL_8URY_114 | 1/a/2795:2801 | UNCG variation | homologous HL_5J7L_200 NA | |
| HL_8URY_115 | 1/d/34:48 | No text annotation | homologous HL_5J7L_215 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8URY_001 | No text annotation | ||
| HL_8URY_002 | tRNA anticodon loop | ||
| HL_8URY_003 | No text annotation | ||
| HL_8URY_004 | No text annotation | ||
| HL_8URY_005 | tRNA anticodon loop | ||
| HL_8URY_006 | No text annotation | ||
| HL_8URY_007 | No text annotation | ||
| HL_8URY_008 | No text annotation | ||
| HL_8URY_009 | GNRA | ||
| HL_8URY_010 | GNRA | ||
| HL_8URY_110 | No text annotation | ||
| HL_8URY_011 | UNCG | ||
| HL_8URY_013 | GNRA | ||
| HL_8URY_015 | UNCG | ||
| HL_8URY_019 | No text annotation | ||
| HL_8URY_024 | No text annotation | ||
| HL_8URY_025 | GNRA | ||
| HL_8URY_027 | No text annotation | ||
| HL_8URY_029 | No text annotation | ||
| HL_8URY_030 | GNRA | ||
| HL_8URY_031 | T-loop related | ||
| HL_8URY_111 | No text annotation | ||
| HL_8URY_038 | GNRA | ||
| HL_8URY_039 | No text annotation | ||
| HL_8URY_040 | No text annotation | ||
| HL_8URY_041 | No text annotation | ||
| HL_8URY_042 | UNCG | ||
| HL_8URY_043 | No text annotation | ||
| HL_8URY_044 | No text annotation | ||
| HL_8URY_045 | No text annotation | ||
| HL_8URY_046 | No text annotation | ||
| HL_8URY_047 | T-loop with 2 stacked bulged bases | ||
| HL_8URY_048 | No text annotation | ||
| HL_8URY_049 | T-loop with unstacked turn | ||
| HL_8URY_050 | No text annotation | ||
| HL_8URY_051 | Pseudoknot geometry | ||
| HL_8URY_052 | GNRA | ||
| HL_8URY_053 | GNRA | ||
| HL_8URY_054 | No text annotation | ||
| HL_8URY_055 | T-loop with 2 stacked bulged bases | ||
| HL_8URY_056 | No text annotation | ||
| HL_8URY_057 | GNRA | ||
| HL_8URY_058 | No text annotation | ||
| HL_8URY_059 | GNRA wlth tandem sheared | ||
| HL_8URY_060 | No text annotation | ||
| HL_8URY_061 | No text annotation | ||
| HL_8URY_062 | No text annotation | ||
| HL_8URY_112 | No text annotation | ||
| HL_8URY_063 | No text annotation | ||
| HL_8URY_064 | No text annotation | ||
| HL_8URY_065 | No text annotation | ||
| HL_8URY_066 | No text annotation | ||
| HL_8URY_067 | GNRA wlth tandem sheared | ||
| HL_8URY_068 | No text annotation | ||
| HL_8URY_069 | GNRA | ||
| HL_8URY_070 | T-loop with 2 stacked bulged bases | ||
| HL_8URY_071 | Pseudoknot geometry with 3' bulge | ||
| HL_8URY_072 | GNRA | ||
| HL_8URY_073 | No text annotation | ||
| HL_8URY_074 | Mini UNCG with extended bulge | ||
| HL_8URY_075 | Pseudoknot geometry with 3' bulge | ||
| HL_8URY_076 | UNCG | ||
| HL_8URY_077 | Mini UNCG | ||
| HL_8URY_078 | No text annotation | ||
| HL_8URY_079 | GNRA | ||
| HL_8URY_080 | UNCG | ||
| HL_8URY_113 | No text annotation | ||
| HL_8URY_081 | No text annotation | ||
| HL_8URY_082 | No text annotation | ||
| HL_8URY_083 | No text annotation | ||
| HL_8URY_084 | GNRA related | ||
| HL_8URY_085 | GNRA variation | ||
| HL_8URY_086 | No text annotation | ||
| HL_8URY_087 | No text annotation | ||
| HL_8URY_088 | No text annotation | ||
| HL_8URY_089 | No text annotation | ||
| HL_8URY_090 | No text annotation | ||
| HL_8URY_091 | No text annotation | ||
| HL_8URY_092 | No text annotation | ||
| HL_8URY_093 | No text annotation | ||
| HL_8URY_116 | No text annotation | ||
| HL_8URY_094 | Pseudoknot geometry | ||
| HL_8URY_095 | GNRA | ||
| HL_8URY_096 | GNRA | ||
| HL_8URY_097 | No text annotation | ||
| HL_8URY_098 | No text annotation | ||
| HL_8URY_099 | GNRA variation | ||
| HL_8URY_100 | No text annotation | ||
| HL_8URY_101 | GNRA | ||
| HL_8URY_102 | GNRA | ||
| HL_8URY_103 | Ribsomal LSU H95 | ||
| HL_8URY_104 | No text annotation | ||
| HL_8URY_105 | No text annotation | ||
| HL_8URY_106 | No text annotation | ||
| HL_8URY_107 | GNRA | ||
| HL_8URY_108 | No text annotation | ||
| HL_8URY_109 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8URY_003 | 1/D/47:52, 1/D/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8URY_004 | 1/D/54:56, 1/D/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_8URY_005 | 1/D/63:66, 1/D/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_8URY_009 | 1/D/128:131, 1/D/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_8URY_010 | 1/D/132:136, 1/D/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_8URY_012 | 1/D/147:153, 1/D/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_8URY_015 | 1/D/249:252, 1/D/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8URY_016 | 1/D/292:293, 1/D/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_8URY_017 | 1/D/367:369, 1/D/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_8URY_018 | 1/D/371:375, 1/D/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_8URY_019 | 1/D/375:376, 1/D/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8URY_020 | 1/D/409:416, 1/D/427:433 | No text annotation | geometric IL_6CZR_359 NA | |
| IL_8URY_022 | 1/D/446:450, 1/D/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_8URY_023 | 1/D/450:455, 1/D/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_8URY_024 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_8URY_027 | 1/D/580:584, 1/D/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_8URY_028 | 1/D/594:596, 1/D/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8URY_030 | 1/D/605:612, 1/D/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_8URY_035 | 1/D/684:688, 1/D/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8URY_038 | 1/D/887:894, 1/D/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8URY_039 | 1/D/922:923, 1/D/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_8URY_040 | 1/D/925:927, 1/D/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_8URY_041 | 1/D/933:935, 1/D/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8URY_043 | 1/D/993:997, 1/D/1044:1045 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_8URY_049 | 1/D/1057:1058, 1/D/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8URY_052 | 1/D/1124:1128, 1/D/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8URY_053 | 1/D/1129:1132, 1/D/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_8URY_054 | 1/D/1158:1161, 1/D/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_8URY_055 | 1/D/1247:1253, 1/D/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8URY_056 | 1/D/1255:1258, 1/D/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_8URY_057 | 1/D/1259:1263, 1/D/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_8URY_058 | 1/D/1303:1308, 1/D/1329:1334 | No text annotation | geometric IL_5J7L_057 NA | |
| IL_8URY_064 | 1/D/1430:1435, 1/D/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_8URY_065 | 1/D/1440:1442, 1/D/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_8URY_066 | 1/D/1445:1448, 1/D/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_8URY_076 | 1/a/293:295, 1/a/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8URY_093 | 1/a/862:863, 1/a/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_8URY_136 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_8URY_145 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8URY_191 | 1/d/34:38, 1/d/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 NA | |
| IL_8URY_192 | 1/d/71:79, 1/d/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8URY_193 | No text annotation | ||
| IL_8URY_194 | No text annotation | ||
| IL_8URY_195 | No text annotation | ||
| IL_8URY_196 | No text annotation | ||
| IL_8URY_197 | No text annotation | ||
| IL_8URY_198 | No text annotation | ||
| IL_8URY_001 | Single bulged G | ||
| IL_8URY_002 | Single bulged A | ||
| IL_8URY_006 | Minor groove platform with extra cWW | ||
| IL_8URY_007 | Minor groove platform | ||
| IL_8URY_199 | Single bulged G | ||
| IL_8URY_008 | Single bulged G, near cWW | ||
| IL_8URY_011 | Isolated cWH basepair | ||
| IL_8URY_200 | No text annotation | ||
| IL_8URY_013 | No text annotation | ||
| IL_8URY_014 | Kink-turn with non-sequential stacking | ||
| IL_8URY_021 | No text annotation | ||
| IL_8URY_025 | Kink-turn related | ||
| IL_8URY_026 | No text annotation | ||
| IL_8URY_029 | Major groove minor groove platform; mini C-loop | ||
| IL_8URY_031 | Major groove platform; stack outside cWW | ||
| IL_8URY_032 | Single stack bend | ||
| IL_8URY_033 | Tandem non-canonical cWW pairs | ||
| IL_8URY_201 | Triple non-canonical cWW pairs | ||
| IL_8URY_034 | No text annotation | ||
| IL_8URY_036 | Left turn | ||
| IL_8URY_037 | tSH-tHW-tHS | ||
| IL_8URY_042 | No text annotation | ||
| IL_8URY_208 | Single stack bend | ||
| IL_8URY_044 | No text annotation | ||
| IL_8URY_202 | No text annotation | ||
| IL_8URY_045 | Tandem non-canonical cWW pairs | ||
| IL_8URY_046 | Single bulged U | ||
| IL_8URY_047 | No text annotation | ||
| IL_8URY_048 | Isolated cWS basepair | ||
| IL_8URY_050 | Single bulged A | ||
| IL_8URY_051 | Isolated non-canonical cWW pair | ||
| IL_8URY_059 | No text annotation | ||
| IL_8URY_060 | No text annotation | ||
| IL_8URY_061 | Partly complementary | ||
| IL_8URY_062 | Isolated non-canonical cWW pair | ||
| IL_8URY_063 | Double sheared | ||
| IL_8URY_067 | Triple sheared with non-canonical cWW | ||
| IL_8URY_068 | Single bulged A | ||
| IL_8URY_069 | Minor groove platform | ||
| IL_8URY_070 | No text annotation | ||
| IL_8URY_071 | Single stack bend | ||
| IL_8URY_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URY_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8URY_074 | No text annotation | ||
| IL_8URY_075 | No text annotation | ||
| IL_8URY_077 | No text annotation | ||
| IL_8URY_078 | Double sheared | ||
| IL_8URY_079 | Isolated non-canonical cWW pair | ||
| IL_8URY_080 | AAA cross-strand stack | ||
| IL_8URY_081 | No text annotation | ||
| IL_8URY_082 | tHW-tHW cross-strand stack | ||
| IL_8URY_083 | Single bulged A | ||
| IL_8URY_084 | Single bulged G | ||
| IL_8URY_085 | Triple sheared | ||
| IL_8URY_086 | Major groove platform | ||
| IL_8URY_087 | Multiple bulged bases | ||
| IL_8URY_088 | Single stack bend | ||
| IL_8URY_089 | 90 degree turn | ||
| IL_8URY_203 | No text annotation | ||
| IL_8URY_090 | Stack outside cWW | ||
| IL_8URY_091 | Single stack bend | ||
| IL_8URY_092 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8URY_094 | C-loop with bulged stacked A's | ||
| IL_8URY_095 | Isolated non-canonical cWW pair | ||
| IL_8URY_096 | Double sheared with non-canonical cWW | ||
| IL_8URY_204 | No text annotation | ||
| IL_8URY_209 | Single bulged A | ||
| IL_8URY_097 | Tandem non-canonical cWW pairs | ||
| IL_8URY_098 | Single stack bend | ||
| IL_8URY_099 | Single bulged C | ||
| IL_8URY_100 | UAA/GAN | ||
| IL_8URY_101 | SSU/LSU pseudoknot | ||
| IL_8URY_102 | Single bulged U | ||
| IL_8URY_103 | Kink-turn related | ||
| IL_8URY_104 | No text annotation | ||
| IL_8URY_105 | Isolated non-canonical cWW pair | ||
| IL_8URY_106 | Tandem non-canonical cWW pairs | ||
| IL_8URY_210 | No text annotation | ||
| IL_8URY_107 | No text annotation | ||
| IL_8URY_108 | No text annotation | ||
| IL_8URY_109 | Major groove platform | ||
| IL_8URY_110 | Tandem non-canonical cWW pairs | ||
| IL_8URY_111 | Isolated cWS basepair | ||
| IL_8URY_112 | No text annotation | ||
| IL_8URY_113 | Kink-turn | ||
| IL_8URY_114 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8URY_115 | Major groove platform; stack outside cWW | ||
| IL_8URY_116 | C-loop | ||
| IL_8URY_117 | UAA/GAN | ||
| IL_8URY_118 | tSH-tHW-tHS | ||
| IL_8URY_119 | No text annotation | ||
| IL_8URY_120 | Single stack bend | ||
| IL_8URY_121 | Single stack bend | ||
| IL_8URY_205 | No text annotation | ||
| IL_8URY_122 | No text annotation | ||
| IL_8URY_123 | UAA/GAN | ||
| IL_8URY_124 | Tandem non-canonical cWW pairs | ||
| IL_8URY_125 | tSH-tHW | ||
| IL_8URY_126 | Single bulged U | ||
| IL_8URY_127 | No text annotation | ||
| IL_8URY_128 | tSH-tHW-tHS | ||
| IL_8URY_129 | 180 degree turn | ||
| IL_8URY_130 | Single bulged A | ||
| IL_8URY_131 | UAA/GAN variation | ||
| IL_8URY_132 | No text annotation | ||
| IL_8URY_133 | Isolated tWW turn | ||
| IL_8URY_134 | Major groove platform; stack outside cWW | ||
| IL_8URY_206 | No text annotation | ||
| IL_8URY_135 | Intercalated tWH | ||
| IL_8URY_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8URY_138 | Triple sheared | ||
| IL_8URY_139 | Single bulged C | ||
| IL_8URY_140 | Single bulged A | ||
| IL_8URY_141 | Kink-turn related | ||
| IL_8URY_142 | Minor groove platform, major groove intercalation | ||
| IL_8URY_143 | Major groove intercalation | ||
| IL_8URY_144 | Major groove minor groove platform; mini C-loop | ||
| IL_8URY_207 | No text annotation | ||
| IL_8URY_146 | Intercalated cWW | ||
| IL_8URY_147 | Bulged stacked bases | ||
| IL_8URY_148 | No text annotation | ||
| IL_8URY_149 | Major groove platform | ||
| IL_8URY_150 | No text annotation | ||
| IL_8URY_151 | No text annotation | ||
| IL_8URY_152 | Decoding loop related | ||
| IL_8URY_153 | Minor groove platform | ||
| IL_8URY_154 | Isolated tHS basepair with bulges | ||
| IL_8URY_155 | Isolated non-canonical cWW pair | ||
| IL_8URY_156 | Tandem non-canonical cWW pairs | ||
| IL_8URY_157 | Isolated cWH basepair | ||
| IL_8URY_158 | Isolated non-canonical cWW pair | ||
| IL_8URY_159 | Tandem non-canonical cWW pairs | ||
| IL_8URY_160 | Isolated non-canonical cWW pair | ||
| IL_8URY_161 | Isolated non-canonical cWW pair | ||
| IL_8URY_162 | No text annotation | ||
| IL_8URY_163 | Isolated non-canonical cWW pair | ||
| IL_8URY_164 | Kink-turn | ||
| IL_8URY_165 | Single bulged U | ||
| IL_8URY_166 | Double sheared | ||
| IL_8URY_167 | No text annotation | ||
| IL_8URY_168 | No text annotation | ||
| IL_8URY_169 | No text annotation | ||
| IL_8URY_170 | Major groove minor groove platform with extra cWW | ||
| IL_8URY_171 | Double sheared with non-canonical cWW | ||
| IL_8URY_172 | No text annotation | ||
| IL_8URY_173 | Isolated non-canonical cWW with bulges | ||
| IL_8URY_174 | No text annotation | ||
| IL_8URY_175 | Major groove platform with intercalation | ||
| IL_8URY_176 | No text annotation | ||
| IL_8URY_177 | Single bulged A | ||
| IL_8URY_178 | tSH-tHS-tHW | ||
| IL_8URY_179 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8URY_180 | C-loop | ||
| IL_8URY_181 | UAA/GAN related, with intercalation | ||
| IL_8URY_182 | Multiple bulged bases | ||
| IL_8URY_183 | UAA/GAN with extra cWW | ||
| IL_8URY_184 | No text annotation | ||
| IL_8URY_185 | Major groove intercalation | ||
| IL_8URY_186 | Multiple bulged bases with non-canonical cWW | ||
| IL_8URY_187 | tHS double platform | ||
| IL_8URY_188 | Major groove intercalation | ||
| IL_8URY_189 | No text annotation | ||
| IL_8URY_190 | Major groove minor groove platform; mini C-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8URY_020 | 1/D/46:47, 1/D/361:367, 1/D/393:395 | No text annotation | geometric J3_5J7L_001 NA | |
| J3_8URY_021 | 1/D/46:52, 1/D/359:367, 1/D/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_8URY_002 | 1/D/936:939, 1/D/1344:1350, 1/D/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8URY_025 | 1/D/943:946, 1/D/1235:1237, 1/D/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_8URY_004 | 1/D/955:962, 1/D/973:984, 1/D/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_8URY_026 | 1/D/990:997, 1/D/1044:1047, 1/D/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8URY_028 | 1/D/1116:1118, 1/D/1155:1161, 1/D/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8URY_009 | 1/D/1237:1241, 1/D/1296:1303, 1/D/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_8URY_036 | 1/a/2282:2284, 1/a/2384:2395, 1/a/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8URY_019 | 1/d/10:16, 1/d/68:70, 1/d/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_8URY_004 | 1/D/142:144, 1/D/178:184, 1/D/193:198, 1/D/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_8URY_005 | 1/D/575:577, 1/D/764:769, 1/D/810:821, 1/D/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_8URY_001 | 1/D/36:39, 1/D/403:406, 1/D/436:440, 1/D/497:500, 1/D/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_8URY_002 | 1/D/36:39, 1/D/403:406, 1/D/436:442, 1/D/492:500, 1/D/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_8URY_003 | 1/D/58:61, 1/D/106:113, 1/D/314:316, 1/D/337:339, 1/D/350:354 | No text annotation | homologous J5_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8URY_022 | No text annotation | ||
| J3_8URY_023 | No text annotation | ||
| J3_8URY_024 | No text annotation | ||
| J3_8URY_001 | No text annotation | ||
| J3_8URY_003 | No text annotation | ||
| J3_8URY_005 | No text annotation | ||
| J3_8URY_006 | No text annotation | ||
| J3_8URY_007 | No text annotation | ||
| J3_8URY_027 | No text annotation | ||
| J3_8URY_008 | No text annotation | ||
| J3_8URY_029 | No text annotation | ||
| J3_8URY_030 | No text annotation | ||
| J3_8URY_031 | No text annotation | ||
| J3_8URY_032 | No text annotation | ||
| J3_8URY_033 | No text annotation | ||
| J3_8URY_010 | No text annotation | ||
| J3_8URY_011 | No text annotation | ||
| J3_8URY_012 | No text annotation | ||
| J3_8URY_013 | No text annotation | ||
| J3_8URY_014 | No text annotation | ||
| J3_8URY_034 | No text annotation | ||
| J3_8URY_035 | No text annotation | ||
| J3_8URY_015 | Kink-turn 3-way junction | ||
| J3_8URY_016 | No text annotation | ||
| J3_8URY_017 | No text annotation | ||
| J3_8URY_037 | No text annotation | ||
| J3_8URY_018 | No text annotation | ||
| J4_8URY_001 | tRNA junction | ||
| J4_8URY_002 | tRNA junction | ||
| J4_8URY_003 | No text annotation | ||
| J4_8URY_006 | No text annotation | ||
| J4_8URY_007 | No text annotation | ||
| J4_8URY_008 | No text annotation | ||
| J4_8URY_009 | No text annotation | ||
| J4_8URY_010 | No text annotation | ||
| J4_8URY_011 | No text annotation | ||
| J4_8URY_012 | No text annotation | ||
| J4_8URY_013 | No text annotation | ||
| J4_8URY_014 | No text annotation | ||
| J4_8URY_015 | No text annotation | ||
| J5_8URY_004 | No text annotation | ||
| J5_8URY_005 | No text annotation | ||
| J5_8URY_006 | No text annotation | ||
| J5_8URY_007 | No text annotation | ||
| J6_8URY_001 | No text annotation | ||
| J7_8URY_001 | No text annotation | ||
| J7_8URY_002 | No text annotation |
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