HL_8URY_058

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URY_058 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.1151

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8URY|1|a|U|641
8URY|1|a|U|642
8URY|1|a|A|643
8URY|1|a|A|644
8URY|1|a|C|645
8URY|1|a|U|646
8URY|1|a|G|647

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L33

Chain o

Large ribosomal subunit protein bL35