3D structure

PDB id
8URY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
8URY|1|a|G|2751, 8URY|1|a|C|2755
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8URY_104 not in the Motif Atlas
Homologous match to HL_4WF9_062
Geometric discrepancy: 0.1146
The information below is about HL_4WF9_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53269.1
Basepair signature
cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
11

Unit IDs

8URY|1|a|C|2745
8URY|1|a|U|2746
8URY|1|a|G|2747
8URY|1|a|A|2748
8URY|1|a|A|2749
8URY|1|a|A|2750
8URY|1|a|G|2751
8URY|1|a|C|2752
8URY|1|a|A|2753
8URY|1|a|U|2754
8URY|1|a|C|2755
8URY|1|a|U|2756
8URY|1|a|A|2757
8URY|1|a|A|2758
8URY|1|a|G|2759

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36
Chain s
Large ribosomal subunit protein uL13

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