3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UAAUUCA
Length
7 nucleotides
Bulged bases
8UT0|1|2|A|452, 8UT0|1|2|U|454, 8UT0|1|2|C|455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_012 not in the Motif Atlas
Homologous match to HL_8P9A_201
Geometric discrepancy: 0.2222
The information below is about HL_8P9A_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.5
Basepair signature
cWW-F-F
Number of instances in this motif group
26

Unit IDs

8UT0|1|2|U|450
8UT0|1|2|A|451
8UT0|1|2|A|452
8UT0|1|2|U|453
8UT0|1|2|U|454
8UT0|1|2|C|455
8UT0|1|2|A|456

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
40S ribosomal protein S4-A
Chain Sd
40S ribosomal protein S24-A

Coloring options:


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